Browse Element(s) Details


Os.6419.1.S1_at

Description gb:AK100821.1
DB_XREF= gi:32986030
TID=Os.6419.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023122G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122G10, full insert sequence.
FL= gb:AK100821.1 gb:AK112027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6997011/11Periodic tryptophan protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009647biological_processskotomorphogenesis
GO:0010119biological_processregulation of stomatal movement
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6419.1.S1_at--740--6811Chr01:40790779..40790803 (25 bp)
GTTTACTCTGCACGCACACGAGAAG
LOC_Os01g69970
Os.6419.1.S1_at--116--5971Chr01:40790760..40790784 (25 bp)
GAGAAGGCTGTATCTTCCATCTCCT
LOC_Os01g69970
Os.6419.1.S1_at--288--4371Chr01:40790626..40790745 (25 bp)
CCAAATTTTCTTGCGACAGGCTCGA
LOC_Os01g69970
Os.6419.1.S1_at--64--3291Chr01:40790366..40790484 (25 bp)
CAAAACTCGGAGCTATTTTCTCGGT
LOC_Os01g69970
Os.6419.1.S1_at--1087--9351Chr01:40790334..40790358 (25 bp)
TCGAATGACAGTCCCTTCTTGTTGG
LOC_Os01g69970
Os.6419.1.S1_at--260--10551Chr01:40790319..40790343 (25 bp)
TTCTTGTTGGCCAGCGGAGGATCAA
LOC_Os01g69970
Os.6419.1.S1_at--1023--8491Chr01:40790186..40790210 (25 bp)
TGGAACACACTAACGGAACCGGCTG
LOC_Os01g69970
Os.6419.1.S1_at--477--4871Chr01:40790118..40790142 (25 bp)
GCTTTCCGAGGACCGATACAAGTGA
LOC_Os01g69970
Os.6419.1.S1_at--840--2511Chr01:40790071..40790095 (25 bp)
AACATTGCTGGCTCAAGCGGTTTCT
LOC_Os01g69970
Os.6419.1.S1_at--1083--4671Chr01:40790055..40790079 (25 bp)
GCGGTTTCTGGCTATACATTGCTAC
LOC_Os01g69970
Os.6419.1.S1_at--818--9951Chr01:40789927..40789951 (25 bp)
TACCTTTTGGCGCTTGTGCAACAGA
LOC_Os01g69970
Target Sequence 
GTTTACTCTGCACGCACACGAGAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCT
CGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCTCTCTGAATCCAAAACTCGGA
GCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCTTGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTCTG
GAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACC
GATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACATTGCTACGCACAT
GAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATG
CAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis