Browse Element(s) Details


Os.6433.1.S1_at

Description gb:AF042333.1
DB_XREF= gi:3560532
TID=Os.6433.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6433 (NCBI UniGene Cluster)
DEF=Oryza sativa 24-methylene lophenol C24(1)methyltransferase mRNA, complete cds.
PROD=24-methylene lophenol C24(1)methyltransferase
FL= gb:AK060887.1 gb:AK121681.1 gb:AF042333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0434011/1124-methylenesterol C-methyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04300Os.26758.1.A1_a_at11/113+1949407..1958621Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os03g04310Os.5860.1.S1_at11/113+1962636..1964778basic helix-loop-helix, putative, expressed
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009825biological_processmultidimensional cell growth
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010189biological_processvitamin E biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0042023biological_processDNA endoreduplication
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0003838molecular_functionsterol 24-C-methyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0050342molecular_functiontocopherol O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6433.1.S1_at--113--9311Chr03:1983327..1983351 (25 bp)
TCCCATGGTGGACTCGCCTCAAGAT
LOC_Os03g04340
Os.6433.1.S1_at--530--7571Chr03:1983353..1983377 (25 bp)
GGGCGCATCGCATACTGGCGCAACT
LOC_Os03g04340
Os.6433.1.S1_at--337--1731Chr03:1983398..1983422 (25 bp)
ACCATGCTCCGGATTGCACCCAAGG
LOC_Os03g04340
Os.6433.1.S1_at--1129--431Chr03:1983491..1983515 (25 bp)
ATCTTCACGCCGATGCACATGGTGC
LOC_Os03g04340
Os.6433.1.S1_at--113--1671Chr03:1983525..1983549 (25 bp)
AGCCCGTCGAGAGCAAATAGTGCAA
LOC_Os03g04340
Os.6433.1.S1_at--964--271Chr03:1983541..1983565 (25 bp)
ATAGTGCAACAAAGTCATCGACGAC
LOC_Os03g04340
Os.6433.1.S1_at--107--5611Chr03:1983563..1983587 (25 bp)
GACAACAACAACACCTACCTTCATT
LOC_Os03g04340
Os.6433.1.S1_at--344--131Chr03:1983585..1983609 (25 bp)
ATTCACTCACCAGCGGAAGAAACAG
LOC_Os03g04340
Os.6433.1.S1_at--625--991Chr03:1983746..1983770 (25 bp)
AGGATGATGTTTATTGTTACTCTTT
LOC_Os03g04340
Os.6433.1.S1_at--870--9892Chr07:24903428..24903452 (25 bp)
TACTCTTTCTTGTTCGTAGCTAATT
NONE
Os.6433.1.S1_at--1154--3972Chr03:1983882..1983906 (25 bp)
CGGTGGATCGATCTACTATCAGTAT
LOC_Os03g04340
Target Sequence 
TCCCATGGTGGACTCGCCTCAAGATGGGGCGCATCGCATACTGGCGCAACTCCCTCGTCGTCCGCGTGCTCACCATGCTC
CGGATTGCACCCAAGGGCGTCTGCGAGGTGCACGAGATGCTNTACGAGACCGCGCAGCACCTCACCCGCGGCGGCGAGAC
CGGCATCTTCACGCCGATGCACATGGTGCTCCTCCGCAAGCCCGTCGAGAGCAAATAGTGCAACAAAGTCATCGACGACA
ACAACAACACCTACCTTCATTCACTCACCAGCGGAAGAAACAGAGGGAAAACAACAAAAAAAATCTCGCAGATCAGCAGC
TGAGGTAAGAAGAGCAGACTACCTACCTGGTGAGGAGGAGAGGTTGAAGAAGAGAGTGCCTTAAAATTAAGTTAAATTTG
ATCGTTTAGAGGAGAAATAAGGATGATGTTTATTGTTACTCTTTCTTGTTCGTAGCTAATTTTGCTTTCAATTTTTTTTG
GTGGAGGATTTTGGGTTGGAAAGACAAGGTCGGGATCTCTTTTAAAGTTTGTTTTTCTTTTCTTTTCCCTCTTGATCGGT
GGATCGATCTACTATCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis