Browse Element(s) Details


Os.6496.1.S1_a_at

Description gb:AK073827.1
DB_XREF= gi:32983850
TID=Os.6496.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1148D12.19 (B1148D12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068H02, full insert sequence.
FL= gb:AK073827.1 gb:AK104032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6020011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_x_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60170Os.42186.1.S1_at11/111+35128008..35128880expressed protein
LOC_Os01g60180NANA1+35130341..35130895hypothetical protein
LOC_Os01g60190Os.4899.1.S1_a_at11/111+35131159..351349052,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os01g60200Os.6496.1.S1_a_at11/111+35135032..35139051expressed protein
LOC_Os01g60210NANA1+35149827..35150159transposon protein, putative, unclassified
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified
LOC_Os01g60230Os.38376.2.S1_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_s_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_at9/111+35161430..35166673auxin efflux carrier family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6496.1.S1_a_at--597--8111Chr01:35136304..35136328 (25 bp)
GGAATTTCCGTGGTGAATTAGTCAC
LOC_Os01g60200
Os.6496.1.S1_a_at--128--1171Chr01:35136285..35136309 (25 bp)
AGTCACATCTTTTGAGGACCATATG
LOC_Os01g60200
Os.6496.1.S1_a_at--978--8091Chr01:35136270..35136294 (25 bp)
GGACCATATGTTGTGGCACCCTGAT
LOC_Os01g60200
Os.6496.1.S1_a_at--196--2131Chr01:35136235..35136259 (25 bp)
ACAGTATTTACATCACCAGCAACCA
LOC_Os01g60200
Os.6496.1.S1_a_at--547--191Chr01:35136200..35136224 (25 bp)
ATTTCTTACTGCAAGGCTGATCCAA
LOC_Os01g60200
Os.6496.1.S1_a_at--1031--8331Chr01:35136186..35136210 (25 bp)
GGCTGATCCAAATGATCCTTCTTCA
LOC_Os01g60200
Os.6496.1.S1_a_at--104--631Chr01:35135524..35135546 (23 bp)
ATGCTTGCTCCATAAATATCAGTGA
LOC_Os01g60200
Os.6496.1.S1_a_at--1106--5091Chr01:35135448..35135472 (25 bp)
GCAAAGGGTGTCTAAGTTCCAAAGT
LOC_Os01g60200
Os.6496.1.S1_a_at--204--2331Chr01:35135428..35135452 (25 bp)
AAAGTACACCTTCCGAGGCACTGGG
LOC_Os01g60200
Os.6496.1.S1_a_at--1149--371Chr01:35135399..35135423 (25 bp)
ATCACAGCTCTGTACTACGATGAAG
LOC_Os01g60200
Os.6496.1.S1_a_at--146--10091Chr01:35135344..35135368 (25 bp)
TAGGCCTTGTCCATGTGTGGTCAAA
LOC_Os01g60200
Target Sequence 
GGAATTTCCGTGGTGAATTAGTCACATCTTTTGAGGACCATATGTTGTGGCACCCTGATTGCAATACCAACAGTATTTAC
ATCACCAGCAACCAAGATCTTATTATTTCTTACTGCAAGGCTGATCCAAATGATCCTTCTTCAGAAGAAAATGCTTGCTC
CATAAATATCAGTGAGATCTTAACCGGAAAATGCTTGGCCAAAATAAAGGCAGGGAACCTTAACAAGCAAAGGGTGTCTA
AGTTCCAAAGTACACCTTCCGAGGCACTGGGGGACATCACAGCTCTGTACTACGATGAAGAGCGTGAGGAGATATACACC
GGCAACCGACTAGGCCTTGTCCATGTGTGGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6496.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis