Browse Element(s) Details


Os.6596.1.S1_at

Description gb:AK068323.1
DB_XREF= gi:32978341
TID=Os.6596.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149H17, full insert sequence.
FL= gb:AK068323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1753011/11pentatricopeptide, putative, expressed
LOC_Os08g139901/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17469NANA11+9721297..9721616NA
LOC_Os11g17480OsAffx.18899.1.S1_at11/1111+9726250..9729878Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein
LOC_Os11g17504Os.10419.1.S1_a_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17504OsAffx.18901.1.S1_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17520OsAffx.13097.1.S1_s_at11/1111+9739339..9743409hypothetical protein
LOC_Os11g17520Os.46613.1.S2_at2/1111+9739339..9743409hypothetical protein
LOC_Os11g17530Os.57138.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17530Os.6596.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17540Os.48441.1.S1_at11/1111+9751085..9754806Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17550OsAffx.31019.1.S1_at11/1111+9755436..9756398hypothetical protein
LOC_Os11g17560OsAffx.31020.1.S1_at11/1111+9758124..9758684hypothetical protein
LOC_Os11g17570NANA11+9763048..9763401transposon protein, putative, unclassified
LOC_Os11g17580OsAffx.7134.1.S1_at11/1111+9765907..9766614hypothetical protein
LOC_Os11g17590NANA11+9768096..9768683hypothetical protein
LOC_Os11g17600Os.55735.1.S1_at11/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53370.1.S1_at10/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53046.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17600OsAffx.14636.1.S1_at1/1111+9772833..9785545expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6596.1.S1_at--1054--8332Chr11:9749138..9749162 (25 bp)
GGCTGTTCTTGATTGCTTGCAAGCT
LOC_Os11g17530
Os.6596.1.S1_at--779--5351Chr11:9749308..9749332 (25 bp)
GAAGATCCATTGATGCCGTTATAAC
LOC_Os11g17530
Os.6596.1.S1_at--284--7852Chr11:9749412..9749436 (25 bp)
GGTACTGTATTTTCCAAGTCTCTTC
LOC_Os11g17530
Os.6596.1.S1_at--30--9532Chr11:9749430..9749454 (25 bp)
TCTCTTCCAGTTTTGTTCCTTTCAA
LOC_Os11g17530
Os.6596.1.S1_at--1090--3111Chr11:9749453..9749477 (25 bp)
AATTTGTTCCTCATTTGCCTGGCGA
LOC_Os11g17530
Os.6596.1.S1_at--878--4591Chr11:9749474..9749498 (25 bp)
GCGAAATTTGTTCCTCGTTTGTCTA
LOC_Os11g17530
Os.6596.1.S1_at--1107--9831Chr11:9749513..9749537 (25 bp)
TAAAGTATTCTTACACTCTGCCACC
LOC_Os11g17530
Os.6596.1.S1_at--57--4351Chr11:9749536..9749560 (25 bp)
CCACCCGACGATCTGTAATTTATGT
LOC_Os11g17530
Os.6596.1.S1_at--118--4191Chr11:9749563..9749587 (25 bp)
CCCATCCATGTTACGTTTTCTTGTT
LOC_Os11g17530
Os.6596.1.S1_at--1051--10292Chr11:9749653..9749677 (25 bp)
TTTCTGGCCAAGGTTTTCTGACTTA
LOC_Os11g17530
Os.6596.1.S1_at--752--10771Chr11:9749679..9749703 (25 bp)
TTGATGCAACTACTACGGGACTTCC
LOC_Os11g17530
Target Sequence 
GGCTGTTCTTGATTGCTTGCAAGCTCACATGGAATGCAAGTATGATATGCTTACAGAAAGCCTGGAATAGTGGAGTGTGA
TGGCTGTGAACATGTCAAGACGACTATAAACACTGTATATATTAAGAGGAATCCTACAGNAAATGGCAAGCATCACTCGC
TAAAGATTAAGAAGATCCATTGATGCCGTTATAACACCTAAACATTATGTGTATGGACTGATTGGTATAAAGATCTGTAT
GGATTGACAAGACTCACGACCAACAAGACATGCAGGTACTGTATTTTCCAAGTCTCTTCCAGTTTTGTTCCTTTCAATTT
GTTCCTCATTTGCCTGGCGAAATTTGTTCCTCGTTTGTCTAANGAAGTGTGGGGAATAAAGTATTCTTACACTCTGCCAC
CACCCGACGATCTGTAATTTATGTCCCCCATCCATGTTACGTTTTCTTGTTAGTTTAGTTCTCCAAAACACAGGTAATTA
GGAGAACAATATTCAGATTTTTTTTTNCTTTAAATTCTTTCTGGCCAAGGTTTTCTGACTTAGATTGATGCAACTACTAC
GGGACTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis