Browse Element(s) Details


Os.6649.1.S1_at

Description gb:AY302058.1
DB_XREF= gi:31872113
GEN=ZIP1
TID=Os.6649.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6649 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc transporter (ZIP1) mRNA, complete cds.
PROD=zinc transporter
FL= gb:AY302058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7411011/11Zinc transporter 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified
LOC_Os01g74060NANA1+43218989..43219558transposon protein, putative, unclassified
LOC_Os01g74070NANA1+43220068..43222830transposon protein, putative, unclassified
LOC_Os01g74080NANA1+43223611..43226771retrotransposon protein, putative, unclassified
LOC_Os01g74090NANA1+43227677..43228867transposon protein, putative, unclassified
LOC_Os01g74100NANA1+43231233..43231949hypothetical protein
LOC_Os01g74110Os.6649.1.S1_at11/111+43232418..43234310Zinc transporter 2 precursor, putative, expressed
LOC_Os01g74120NANA1+43245050..43245370hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006826biological_processiron ion transport
GO:0006828biological_processmanganese ion transport
GO:0006829biological_processzinc ion transport
GO:0006879biological_processiron ion homeostasis
GO:0010043biological_processresponse to zinc ion
GO:0015691biological_processcadmium ion transport
GO:0005375molecular_functioncopper ion transporter activity
GO:0005381molecular_functioniron ion transporter activity
GO:0005384molecular_functionmanganese ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0015086molecular_functioncadmium ion transporter activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6649.1.S1_at--916--5431Chr01:43232978..43233002 (25 bp)
GAACCTGTGGACGATCGGGCTGCAC
LOC_Os01g74110
Os.6649.1.S1_at--1--8331Chr01:43232961..43232985 (25 bp)
GGCTGCACAAGATATTCGCGGCGGT
LOC_Os01g74110
Os.6649.1.S1_at--212--9632Chr08:26514298..26514322 (25 bp)
TCATGATCTGGGACTGATCCATCCA
NONE
Os.6649.1.S1_at--171--6372Chr08:26514313..26514337 (25 bp)
GATCCATCCATCCTAGTATTACACT
NONE
Os.6649.1.S1_at--823--10051Chr01:43232597..43232621 (25 bp)
TAGTATTACACTGCTTCATTTCTTC
LOC_Os01g74110
Os.6649.1.S1_at--78--3152Chr08:26514351..26514375 (25 bp)
AATTCCTGCGCCCATGTATGTATGC
NONE
Os.6649.1.S1_at--706--2552Chr08:26514396..26514420 (25 bp)
AACTGTATGTACACATGCTGCATGC
NONE
Os.6649.1.S1_at--313--4772Chr08:26514412..26514436 (25 bp)
GCTGCATGCATGTTCGATTTCTATC
NONE
Os.6649.1.S1_at--938--1792Chr08:26514437..26514461 (25 bp)
ACCCCATTCATTAATCGTGGCCGAA
NONE
Os.6649.1.S1_at--485--8412Chr08:26514455..26514479 (25 bp)
GGCCGAAACAGTTCATGTCCACTAA
NONE
Os.6649.1.S1_at--815--7272Chr08:26514471..26514495 (25 bp)
GTCCACTAATGATTGCTGTATCTAT
NONE
Target Sequence 
GAACCTGTGGACGATCGGGCTGCACAAGATATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCCAAGC
GCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGCCATC
GACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGT
CGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCG
CCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCAT
TTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGT
TCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis