Browse Element(s) Details


Os.38236.2.S1_x_at

Description gb:NM_189462.1
DB_XREF= gi:34906007
GEN=P0518C01.15
TID=Os.38236.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38236 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RING-H2 finger protein RHC2a (P0518C01.15), mRNA.
PROD=putative RING-H2 finger protein RHC2a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7404011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified
LOC_Os01g74060NANA1+43218989..43219558transposon protein, putative, unclassified
LOC_Os01g74070NANA1+43220068..43222830transposon protein, putative, unclassified
LOC_Os01g74080NANA1+43223611..43226771retrotransposon protein, putative, unclassified
LOC_Os01g74090NANA1+43227677..43228867transposon protein, putative, unclassified
LOC_Os01g74100NANA1+43231233..43231949hypothetical protein
LOC_Os01g74110Os.6649.1.S1_at11/111+43232418..43234310Zinc transporter 2 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38236.2.S1_x_at--245--1071Chr01:43212285..43212309 (25 bp)
AGGGAGATGCCCTGCGCCCACATCT
LOC_Os01g74040
Os.38236.2.S1_x_at--913--6291Chr01:43212384..43212408 (25 bp)
GATGACCACGACTCGACCAATGCTG
LOC_Os01g74040
Os.38236.2.S1_x_at--368--9111Chr01:43212410..43212434 (25 bp)
TGCTGCTCAGGCTGCCGCCGGAAGC
LOC_Os01g74040
Os.38236.2.S1_x_at--402--8191Chr01:43212429..43212453 (25 bp)
GGAAGCAGCGACGAGGACGCCACCA
LOC_Os01g74040
Os.38236.2.S1_x_at--107--6171Chr01:43212441..43212465 (25 bp)
GAGGACGCCACCACCGTGGGTACTC
LOC_Os01g74040
Os.38236.2.S1_x_at--194--7491Chr01:43212456..43212480 (25 bp)
GTGGGTACTCTCACCATTTGGAGGC
LOC_Os01g74040
Os.38236.2.S1_x_at--617--9651Chr01:43212466..43212490 (25 bp)
TCACCATTTGGAGGCTTCCCGGTGG
LOC_Os01g74040
Os.38236.2.S1_x_at--188--7371Chr01:43212538..43212562 (25 bp)
GTGAGAGGGAGCTCCCGGTTCTCTA
LOC_Os01g74040
Os.38236.2.S1_x_at--256--3971Chr01:43212553..43212577 (25 bp)
CGGTTCTCTACACCCAGATGGATGA
LOC_Os01g74040
Os.38236.2.S1_x_at--573--3351Chr01:43212563..43212587 (25 bp)
CACCCAGATGGATGATGGCGGCTTC
LOC_Os01g74040
Os.38236.2.S1_x_at--511--491Chr01:43212790..43212810 (21 bp)
ATCGGCCTGAGGAGCCAGATCACGA
LOC_Os01g74040
Target Sequence 
AGGGAGATGCCCTGCGCCCACATCTACCACCACAATTGCATCCTCCCCTGGCTCGCTCTCCACAACTCATGCCCCGTCTG
CCGCCACCGCATGCCCACCGATGACCACGACTCGACCAATGCTGCTGCTGCTCAGGCTGCCGCCGGAAGCAGCGACGAGG
ACGCCACCACCGTGGGTACTCTCACCATTTGGAGGCTTCCCGGTGGGGGATATGCGGTTGGGAGGTTTGCTGCTGCTGGT
GGGACAAGAGCCGGTGAGAGGGAGCTCCCGGTTCTCTACACCCAGATGGATGATGGCGGCTTCAACGGCGGCGGCGGCTC
GGGCTCGCCGACGATGATCGGCCTGAGGAGCCAGATCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38236.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis