Browse Element(s) Details


Os.38236.1.S1_at

Description gb:AK106003.1
DB_XREF= gi:32991212
TID=Os.38236.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RING-H2 finger protein RHC2a (P0518C01.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A03, full insert sequence.
FL= gb:AK106003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7404011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified
LOC_Os01g74060NANA1+43218989..43219558transposon protein, putative, unclassified
LOC_Os01g74070NANA1+43220068..43222830transposon protein, putative, unclassified
LOC_Os01g74080NANA1+43223611..43226771retrotransposon protein, putative, unclassified
LOC_Os01g74090NANA1+43227677..43228867transposon protein, putative, unclassified
LOC_Os01g74100NANA1+43231233..43231949hypothetical protein
LOC_Os01g74110Os.6649.1.S1_at11/111+43232418..43234310Zinc transporter 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38236.1.S1_at--766--5771Chr01:43212614..43212638 (25 bp)
GACGATGATCGGGTGGTCATCTAGA
LOC_Os01g74040
Os.38236.1.S1_at--902--8571Chr01:43212627..43212651 (25 bp)
TGGTCATCTAGAGGGAGTCGTTCGT
LOC_Os01g74040
Os.38236.1.S1_at--322--1331Chr01:43212636..43212660 (25 bp)
AGAGGGAGTCGTTCGTCCCAGAGAC
LOC_Os01g74040
Os.38236.1.S1_at--631--1151Chr01:43212642..43212666 (25 bp)
AGTCGTTCGTCCCAGAGACAGAGAA
LOC_Os01g74040
Os.38236.1.S1_at--1053--1351Chr01:43212655..43212679 (25 bp)
AGAGACAGAGAAGCATCATCCCACG
LOC_Os01g74040
Os.38236.1.S1_at--336--5971Chr01:43212662..43212686 (25 bp)
GAGAAGCATCATCCCACGCTTGTTT
LOC_Os01g74040
Os.38236.1.S1_at--136--2511Chr01:43212690..43212714 (25 bp)
AACATGTTTGCATGCTTTAGGCATC
LOC_Os01g74040
Os.38236.1.S1_at--1081--3511Chr01:43212700..43212724 (25 bp)
CATGCTTTAGGCATCATGATGCAAC
LOC_Os01g74040
Os.38236.1.S1_at--274--6331Chr01:43212717..43212741 (25 bp)
GATGCAACTGCAGATTCAGGAGATT
LOC_Os01g74040
Os.38236.1.S1_at--108--6931Chr01:43212975..43212999 (25 bp)
GTAGGCATAGCAAAATTGCTGCTTA
LOC_Os01g74040
Os.38236.1.S1_at--592--2251Chr01:43213049..43213073 (25 bp)
AAATATCATATATCTTTGGTTTGCC
LOC_Os01g74040
Target Sequence 
GACGATGATCGGGTGGTCATCTAGAGGGAGTCGTTCGTCCCAGAGACAGAGAAGCATCATCCCACGCTTGTTTNGCAACA
TGTTTGCATGCTTTAGGCATCATGATGCAACTGCAGATTCAGGAGATTATTCCTCNCGGGNTGGGAGGAGATCCTCCTCC
TCTNTNTTCACCCGCAGCNTGAGGAGCCAGATCNCNAGCTGGAGATCGGAAGATGGCCACCCCGATGCCATTGNTNNTAG
ATGATAATGNTGGTATGATTTGGAANTTGATCATCACNTGCATNTTTTTGNTACCTTTNGCTTGATGATTTNGNGTAAGT
ANTAGATAATATCAAGAAAGATATGATGAGTNTTATTGTTTGTAGGCATAGCAAAATTGCTGCTTAATTTGTACATATAG
CAGATTGTTCAGGTAACAATGTAACATTACAATTCAAATATCATATATCTTTGGTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis