Browse Element(s) Details


Os.45964.1.S1_at

Description gb:AK120840.1
DB_XREF= gi:37990463
TID=Os.45964.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome B5 (P0518C01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022G15, full insert sequence.
FL= gb:AK120840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7399011/11Cytochrome b5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45964.1.S1_at--610--7271Chr01:43185822..43185846 (25 bp)
GTCCAACAACAAGGTGCTGACCCTG
LOC_Os01g73990
Os.45964.1.S1_at--21--9111Chr01:43185836..43185860 (25 bp)
TGCTGACCCTGGAGGAGGTCTCCAA
LOC_Os01g73990
Os.45964.1.S1_at--735--7751Chr01:43186708..43186732 (25 bp)
GGTGATGATGTCTTGTTGTCTTCGA
LOC_Os01g73990
Os.45964.1.S1_at--1011--10791Chr01:43186723..43186837 (25 bp)
TTGTCTTCGACTGCCAAGGATGCTA
LOC_Os01g73990
Os.45964.1.S1_at--472--2911Chr01:43186828..43186852 (25 bp)
AAGGATGCTACCGACGACTTCGAAG
LOC_Os01g73990
Os.45964.1.S1_at--1064--10111Chr01:43186897..43186921 (25 bp)
TATGTCGGCGACATTGACGCAACCA
LOC_Os01g73990
Os.45964.1.S1_at--5--2651Chr01:43186917..43186941 (25 bp)
AACCACGATACCCACCAAGGTGAAG
LOC_Os01g73990
Os.45964.1.S1_at--826--3431Chr01:43187008..43187032 (25 bp)
CAGTTTTTGGTTCCCTTGGCGATAT
LOC_Os01g73990
Os.45964.1.S1_at--468--3431Chr01:43187069..43187093 (25 bp)
CAGAGTCTGCTTAGTATTGTTGTCA
LOC_Os01g73990
Os.45964.1.S1_at--462--4051Chr01:43187135..43187159 (25 bp)
CGAGGATTGCGTATTTTGTACCAGC
LOC_Os01g73990
Os.45964.1.S1_at--642--6971Chr01:43187152..43187176 (25 bp)
GTACCAGCATGGTCTGTCATGTTTG
LOC_Os01g73990
Target Sequence 
GTCCAACAACAAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCA
AGGTGTACAATGTGACCAAGTTTTTGGAGGATCACCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCT
ACCGACGACTTCGAAGATGTGGGGCACAGCACCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGC
AACCACGATACCCACCAAGGTGAAGTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCA
TCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCT
GCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACC
AGCATGGTCTGTCATGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis