Browse Element(s) Details


Os.9015.1.S1_at

Description gb:AK105881.1
DB_XREF= gi:32991090
TID=Os.9015.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cysteine proteinase (P0518C01.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D02, full insert sequence.
FL= gb:AK119182.1 gb:AK059528.1 gb:AK105881.1 gb:AK106011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7398011/11Caricain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9015.1.S1_at--248--8451Chr01:43183863..43183887 (25 bp)
GGCCAGCAAGGGACACGATTACATC
LOC_Os01g73980
Os.9015.1.S1_at--1083--951Chr01:43184066..43184090 (25 bp)
AGGACTCTCTTAATTCATCCTGCTT
LOC_Os01g73980
Os.9015.1.S1_at--357--10531Chr01:43184079..43184103 (25 bp)
TTCATCCTGCTTGTAAAGTTCGTTG
LOC_Os01g73980
Os.9015.1.S1_at--138--2811Chr01:43184094..43184118 (25 bp)
AAGTTCGTTGTTGTTATCTCGGCAC
LOC_Os01g73980
Os.9015.1.S1_at--12--8251Chr01:43184114..43184138 (25 bp)
GGCACTTCCAAGTGTTTCTCAGTAC
LOC_Os01g73980
Os.9015.1.S1_at--786--6831Chr01:43184127..43184151 (25 bp)
GTTTCTCAGTACTCGTATTCATTGT
LOC_Os01g73980
Os.9015.1.S1_at--2--10231Chr01:43184152..43184176 (25 bp)
TATTCATTTTCAATTCCCATCCACA
LOC_Os01g73980
Os.9015.1.S1_at--420--191Chr01:43184176..43184200 (25 bp)
ATTTCAAGATTGTTTGTCTCTCATT
LOC_Os01g73980
Os.9015.1.S1_at--1103--8711Chr01:43184190..43184214 (25 bp)
TGTCTCTCATTATTTTTCATCGGTG
LOC_Os01g73980
Os.9015.1.S1_at--81--7651Chr01:43184240..43184264 (25 bp)
TGTAATAATTACTGGGATTCCCTCT
LOC_Os01g73980
Os.9015.1.S1_at--594--3831Chr01:43184251..43184275 (25 bp)
CTGGGATTCCCTCTTTGTTTCTTTG
LOC_Os01g73980
Target Sequence 
GGCCAGCAAGGGACACGATTACATCATCGTGAAGAACTCGTGGGGATCGCATTGGGGTGAGAAGGGGTACATCCGGATGA
GGAGGGGCACCGGCAAGCACGACGGCCTCTGCGGCATCAACAAGATGGCCTCCTACCCAACCAAGAACGCTTAAATTAAA
TCAGTTTCTTAATTTCAAGGATACAAAATAATAACACAAGAAGAGGACTCTCTTAATTCATCCTGCTTGTAAAGTTCGTT
GTTGTTATCTCGGCACTTCCAAGTGTTTCTCAGTACTCGTATTCATTGTTATTCATTTTCAATTCCCATCCACATTTCAA
GATTGTTTGTCTCTCATTATTTTTCATCGGTGAAAATTAAAGATGGTGATGGATAGATGTAATAATTACTGGGATTCCCT
CTTTGTTTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis