Browse Element(s) Details


Os.14644.1.S1_at

Description gb:AK105975.1
DB_XREF= gi:32991184
TID=Os.14644.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.12 (P0518C01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F06, full insert sequence.
FL= gb:AK105975.1 gb:AK059198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7401011/11Streptomyces cyclase/dehydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified
LOC_Os01g74060NANA1+43218989..43219558transposon protein, putative, unclassified
LOC_Os01g74070NANA1+43220068..43222830transposon protein, putative, unclassified
LOC_Os01g74080NANA1+43223611..43226771retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14644.1.S1_at--1067--10831Chr01:43197878..43197902 (25 bp)
TTGGTCATCTCTTAAGGCTTCATCC
LOC_Os01g74010
Os.14644.1.S1_at--917--6291Chr01:43197686..43197710 (25 bp)
GATGATGACGCGCTTCATGATGTTA
LOC_Os01g74010
Os.14644.1.S1_at--347--3511Chr01:43197671..43197695 (25 bp)
CATGATGTTAGTGGAACACCCAAAA
LOC_Os01g74010
Os.14644.1.S1_at--1063--2031Chr01:43197641..43197665 (25 bp)
ACTTAGGTCACTGGGCATGTCTTGT
LOC_Os01g74010
Os.14644.1.S1_at--960--3171Chr01:43197614..43197638 (25 bp)
CAATTGGATTGGTTGATCTTTCTCA
LOC_Os01g74010
Os.14644.1.S1_at--992--6531Chr01:43197565..43197589 (25 bp)
GATTATTTGGAATTCGGACAGCTTT
LOC_Os01g74010
Os.14644.1.S1_at--22--8151Chr01:43197550..43197574 (25 bp)
GGACAGCTTTGGACGTGCCTGACAG
LOC_Os01g74010
Os.14644.1.S1_at--767--7791Chr01:43197511..43197535 (25 bp)
GGTCCCAAAACCTAATCTTGCTTGT
LOC_Os01g74010
Os.14644.1.S1_at--525--10071Chr01:43197481..43197505 (25 bp)
TAGGATTACCTTTTTGCCACTCAAT
LOC_Os01g74010
Os.14644.1.S1_at--321--7411Chr01:43197436..43197460 (25 bp)
GTGATTAACTACACGATGTTGACAT
LOC_Os01g74010
Os.14644.1.S1_at--369--5051Chr01:43197380..43197404 (25 bp)
GCAGAAAGCTGCTGAATTGGTACTC
LOC_Os01g74010
Target Sequence 
TTGGTCATCTCTTAAGGCTTCATCCCNATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGG
CGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGA
CAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGT
GCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGG
AGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCNATCCTAGGCAGAA
AGCTGCTGAATTGGTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis