Browse Element(s) Details


Os.24891.1.A1_at

Description gb:AK070366.1
DB_XREF= gi:32980390
TID=Os.24891.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycerol-3-phosphate dehydrogenase (NAD+) (P0518C01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050E11, full insert sequence.
FL= gb:AK070366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7400011/11Glycerol-3-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006072biological_processglycerol-3-phosphate metabolism
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24891.1.A1_at--246--5271Chr01:43188028..43188052 (25 bp)
GAATCCACTGAATGCTGTTCTCTGA
LOC_Os01g74000
Os.24891.1.A1_at--764--8991Chr01:43187965..43187989 (25 bp)
TGAAGGACCTCTGCTTTCTAGTGGA
LOC_Os01g74000
Os.24891.1.A1_at--48--2951Chr01:43187938..43187962 (25 bp)
AAGGCTCAGGAAATTCTTCATGTCA
LOC_Os01g74000
Os.24891.1.A1_at--1138--7811Chr01:43187897..43187921 (25 bp)
GGTCATCAACTCATCTGTCAGATCT
LOC_Os01g74000
Os.24891.1.A1_at--437--431Chr01:43187876..43187900 (25 bp)
ATCTTGGACATTTCCAGGCCTTCAG
LOC_Os01g74000
Os.24891.1.A1_at--660--8431Chr01:43187860..43187884 (25 bp)
GGCCTTCAGCAACAGTCCATGCAAG
LOC_Os01g74000
Os.24891.1.A1_at--793--1131Chr01:43187847..43187871 (25 bp)
AGTCCATGCAAGAAGTCGTCAGAAT
LOC_Os01g74000
Os.24891.1.A1_at--524--651Chr01:43187824..43187848 (25 bp)
ATGCACTTACATTTCACATCTGTTT
LOC_Os01g74000
Os.24891.1.A1_at--608--5731Chr01:43187797..43187821 (25 bp)
GACTGATTACACATTATGCTCATAT
LOC_Os01g74000
Os.24891.1.A1_at--770--6851Chr01:43187724..43187748 (25 bp)
GTTTGCTCATATTTGTTATCGTCTA
LOC_Os01g74000
Os.24891.1.A1_at--1099--6771Chr01:43187710..43187734 (25 bp)
GTTATCGTCTAACAGTGGCTTGTTA
LOC_Os01g74000
Target Sequence 
GAATCCACTGAATGCTGTTCTCTGAAGATGTCATCAATAACAGTTTCAGCTTGCTAAAGGTCTTGAAGGACCTCTGCTTT
CTAGTGGAGCAAGGCTCAGGAAATTCTTCATGTCAGTGTTNTTCGTTGCGGGGTCATCAACTCATCTGTCAGATCTTGGA
CATTTCCAGGCCTTCAGCAACAGTCCATGCAAGAAGTCGTCAGAATGCACTTACATTTCACATCTGTTTATGACTGATTA
CACATTATGCTCATATGTGCTTTANTTNTTTTAATGATACAACGCATCNGTATGTGAGCAATATAGTTTGCTCATATTTG
TTATCGTCTAACAGTGGCTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24891.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis