Browse Element(s) Details


Os.6662.1.S1_at

Description gb:AK067043.1
DB_XREF= gi:32977061
TID=Os.6662.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091B04, full insert sequence.
FL= gb:AK067043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4490011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44860NANA5+25986960..25988447retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g44870NANA5+25991581..25993650Zinc knuckle family protein
LOC_Os05g44880NANA5+25996702..26002802retrotransposon protein, putative, unclassified
LOC_Os05g44890NANA5+26003418..26006759retrotransposon protein, putative, unclassified
LOC_Os05g44900Os.6662.1.S1_at11/115+26011673..26012715expressed protein
LOC_Os05g44910Os.5339.2.S1_x_at11/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44910Os.5339.1.S1_at10/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44916Os.8162.1.S1_at11/115+26018012..26023064Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6662.1.S1_at--693--2851Chr05:26012155..26012179 (25 bp)
AAGTCCCAGTCGTTCGCGTGCATGT
LOC_Os05g44900
Os.6662.1.S1_at--977--6451Chr05:26012235..26012259 (25 bp)
GATCAAGTCGTGCAACAGCTACGCC
LOC_Os05g44900
Os.6662.1.S1_at--741--6131Chr05:26012267..26012291 (25 bp)
GAGGGATCGCCAAGACGCAGTCGTC
LOC_Os05g44900
Os.6662.1.S1_at--265--5031Chr05:26012283..26012307 (25 bp)
GCAGTCGTCGAGTTCTTGCGCGAAT
LOC_Os05g44900
Os.6662.1.S1_at--874--9991Chr05:26012377..26012401 (25 bp)
TAGTAGCGACTCTGTAGCGTAGCCG
LOC_Os05g44900
Os.6662.1.S1_at--992--4511Chr05:26012398..26012422 (25 bp)
GCCGCGCGGTAGATTTTGTTCTTGA
LOC_Os05g44900
Os.6662.1.S1_at--1007--6531Chr05:26012453..26012477 (25 bp)
GATTTTGTTCGCAGGCGCATTAGCC
LOC_Os05g44900
Os.6662.1.S1_at--921--2971Chr05:26012486..26012510 (25 bp)
AATGAGCTTAATTACGAGGCGTTTC
LOC_Os05g44900
Os.6662.1.S1_at--273--911Chr05:26012502..26012526 (25 bp)
AGGCGTTTCGTGATCTGCAGCAGTC
LOC_Os05g44900
Os.6662.1.S1_at--377--2591Chr05:26012562..26012586 (25 bp)
AACGATCGTTTTGTGTACTGTAAAT
LOC_Os05g44900
Os.6662.1.S1_at--786--1171Chr05:26012604..26012628 (25 bp)
AGTACATTCGGATGTGCTTTCCTTC
LOC_Os05g44900
Target Sequence 
AAGTCCCAGTCGTTCGCGTGCATGTCGGAGGTGAGGTGCCTGGAGGATCTGCGCAAGAAGGAGAAGCCATACAAGTCGAA
GATCAAGTCGTGCAACAGCTACGCCGCGCTGGGAGGGATCGCCAAGACGCAGTCGTCGAGTTCTTGCGCGAATCTGAGCA
TGATGGGGGCGGGCGGATTCAGGGCTCCCCCGATCCCTGTAAACAAGAACGGCTACCATCAGTAGTAGCGACTCTGTAGC
GTAGCCGCGCGGTAGATTTTGTTCTTGAGGTCTTTTCTCCCCTACCTCTATTTTTGGGGATTTTGTTCGCAGGCGCATTA
GCCTGTGAATGAATGAGCTTAATTACGAGGCGTTTCGTGATCTGCAGCAGTCATAGTAAGGAGGGTTGTTCTTGTTGATG
TTTGAAAAACGATCGTTTTGTGTACTGTAAATACGGAGCAGAGGTTAAAAGTACATTCGGATGTGCTTTCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis