Browse Element(s) Details


Os.6714.1.S1_a_at

Description gb:AK065461.1
DB_XREF= gi:32975479
TID=Os.6714.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative translation initiation factor 3 (P0592C06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021F09, full insert sequence.
FL= gb:AK065461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1211011/11Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os06g431202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12060OsAffx.22699.1.S1_x_at3/117+6731029..6737714retrotransposon protein, putative, unclassified
LOC_Os07g12070NANA7+6738336..6741143hypothetical protein
LOC_Os07g12080Os.5494.1.S1_at11/117+6743983..6744648Trypsin/factor XIIA inhibitor precursor, putative, expressed
LOC_Os07g12090NANA7+6745165..6745467hypothetical protein
LOC_Os07g12100Os.31338.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12100OsAffx.10212.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12110Os.6714.1.S1_a_at11/117+6761788..6765633Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g12120OsAffx.16222.1.S1_at11/117+6775171..6776190hypothetical protein
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0008180cellular_componentsignalosome complex
GO:0003676molecular_functionnucleic acid binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6714.1.S1_a_at--8--1531Chr07:6762171..6762195 (25 bp)
AGCAGCACAACAGGCAGCTCGGTGA
LOC_Os07g12110
Os.6714.1.S1_a_at--998--2751Chr07:6762135..6762159 (25 bp)
AAGACCACAGTTTTGAGGCGCCCGG
LOC_Os07g12110
Os.6714.1.S1_a_at--283--6211Chr07:6762121..6762145 (25 bp)
GAGGCGCCCGGAATTATTTAAGTAG
LOC_Os07g12110
Os.6714.1.S1_a_at--1046--5971Chr07:6762097..6762121 (25 bp)
GAGACAATCCTCTAAACTTTTGGAG
LOC_Os07g12110
Os.6714.1.S1_a_at--856--6631Chr07:6762068..6762092 (25 bp)
GTTGTTTAGCATTGACTCCGTTATC
LOC_Os07g12110
Os.6714.1.S1_a_at--51--411Chr07:6762030..6762054 (25 bp)
ATCTAGGAGGTGGTTTCTCGTTCGC
LOC_Os07g12110
Os.6714.1.S1_a_at--865--6691Chr07:6762011..6762035 (25 bp)
GTTCGCTACAGCATATGCCGACGTT
LOC_Os07g12110
Os.6714.1.S1_a_at--1020--251Chr07:6761999..6762023 (25 bp)
ATATGCCGACGTTTTCTTTCTATTT
LOC_Os07g12110
Os.6714.1.S1_a_at--532--3031Chr07:6761947..6761971 (25 bp)
AATCCTTTCGTTGGTACTACAATCA
LOC_Os07g12110
Os.6714.1.S1_a_at--253--6734Chr10:6651655..6651679 (25 bp)
GTTCTGCTAAATTTGTGGCGCCACA
NONE
Os.6714.1.S1_a_at--1094--8654Chr10:6651668..6651693 (25 bp)
TGTGGCGCCACATTTTACCTTGATT
NONE
Target Sequence 
AGCAGCACAACAGGCAGCTCGGTGAGATTGACAGAGAAGACCACAGTTTTGAGGCGCCCGGAATTATTTAAGTAGAGACA
ATCCTCTAAACTTTTGGAGTTTTGTTGTTTAGCATTGACTCCGTTATCAGTACCTAAGATCATCTAGGAGGTGGTTTCTC
GTTCGCTACAGCATATGCCGACGTTTTCTTTCTATTTTGTACTTGGAATCCTGTGGCTGAAGTTAATCCTTTCGTTGGTA
CTACAATCAAGTATTACCTGATTGTTATGGTGTTTCGTGTTGAAGTGAAGTGCGGAAGTGTGGTCATTTTTATAATTGTA
GGTTCAATGTTTTTCTTGGTTCTGCTAAATTTGTGGCGCCACATTTTACCTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6714.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis