Browse Element(s) Details


Os.6727.1.S1_at

Description gb:AK105351.1
DB_XREF= gi:32990560
TID=Os.6727.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A07, full insert sequence.
FL= gb:AK105351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1967011/11Rhicadhesin receptor precursor, putative, expressed
LOC_Os03g533901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19640NANA5+11431573..11431896hypothetical protein
LOC_Os05g19650Os.45173.5.S1_x_at4/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19650Os.45173.1.S1_x_at2/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19660OsAffx.4381.1.S1_at11/115+11445251..11445454hypothetical protein
LOC_Os05g19670Os.6727.1.S1_at11/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19670Os.20313.1.S1_x_at1/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19670Os.20313.2.S1_x_at1/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19680NANA5+11451719..11452012hypothetical protein
LOC_Os05g19690OsAffx.14763.1.S1_at11/115+11460878..11461611hypothetical protein
LOC_Os05g19700Os.47463.1.S1_x_at5/115+11471458..11472447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19700Os.14491.2.S1_x_at3/115+11471458..11472447transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6727.1.S1_at--730--1771Chr05:11446805..11446829 (25 bp)
ACCGGCGCCAACGTGGAGAAGTTGC
LOC_Os05g19670
Os.6727.1.S1_at--924--8651Chr05:11446845..11446869 (25 bp)
TGGGCGTGTCCATGTCCCGGATCGA
LOC_Os05g19670
Os.6727.1.S1_at--60--3371Chr05:11446915..11446939 (25 bp)
CACCGAGATGGTGTTCGTCCTGCAG
LOC_Os05g19670
Os.6727.1.S1_at--589--1311Chr05:11446920..11446944 (25 bp)
AGATGGTGTTCGTCCTGCAGGGCAC
LOC_Os05g19670
Os.6727.1.S1_at--638--2811Chr05:11447201..11447225 (25 bp)
AAGATCAAATCCAGGCTTGCACCCA
LOC_Os05g19670
Os.6727.1.S1_at--338--9231Chr05:11447210..11447234 (25 bp)
TCCAGGCTTGCACCCAAGAAGAGAT
LOC_Os05g19670
Os.6727.1.S1_at--320--3131Chr05:11447239..11447263 (25 bp)
AATTTCTTTCAGAATTCGCACCTCT
LOC_Os05g19670
Os.6727.1.S1_at--877--1431Chr05:11447249..11447273 (25 bp)
AGAATTCGCACCTCTGCATTTCTGT
LOC_Os05g19670
Os.6727.1.S1_at--629--3772Chr05:11447260..11447284 (25 bp)
CTCTGCATTTCTGTCCATGGATGAG
LOC_Os05g19670
Os.6727.1.S1_at--603--2351Chr05:11447320..11447344 (25 bp)
AAAGCTTGTAGGTCTTCATTGTAAT
LOC_Os05g19670
Os.6727.1.S1_at--1152--3591Chr05:11447336..11447360 (25 bp)
CATTGTAATAAAGGCGTTTGTTCAT
LOC_Os05g19670
Target Sequence 
ACCGGCGCCAACGTGGAGAAGTTGCCGGGGCTCAACACCCTGGGCGTGTCCATGTCCCGGATCGACTACGCCCCCGGCGG
CCTCAACCCGCCGCACACCCACCCGCGCGCCACCGAGATGGTGTTCGTCCTGCAGGGCACCCTCGACGTCGGCTTCATCA
CCACCGCCAACAAGCTGTACACCAAGACCATCTCTGCCGGCGACGTCTTCGTCTTCCCGCGCGGCCTGCTCCACTTCCAG
AAGAACAACGGCGACACCCCCGCCGCCGTCATCTCCGCCTTCAACAGCCAGCTGCCCGGCACGCAGTCCCTCGCCATGAC
GCTCTTCGCGGCGTCGCCGGAGGTGCCCGACGGCGTGCTCACCAAGGCCTTCCAGGTTGGCACCAAGGAGGTGGAGAAGA
TCAAATCCAGGCTTGCACCCAAGAAGAGATAATTAATTTCTTTCAGAATTCGCACCTCTGCATTTCTGTCCATGGATGAG
NNCCGCAATGCTGCTCCGGCAGCAGGCACAAAATTAAAGCTTGTAGGTCTTCATTGTAATAAAGGCGTTTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis