Browse Element(s) Details


OsAffx.14763.1.S1_at

Description tigr:9633.m01788
TID=OsAffx.14763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19650Os.45173.5.S1_x_at4/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19650Os.45173.1.S1_x_at2/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19660OsAffx.4381.1.S1_at11/115+11445251..11445454hypothetical protein
LOC_Os05g19670Os.6727.1.S1_at11/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19670Os.20313.1.S1_x_at1/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19670Os.20313.2.S1_x_at1/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19680NANA5+11451719..11452012hypothetical protein
LOC_Os05g19690OsAffx.14763.1.S1_at11/115+11460878..11461611hypothetical protein
LOC_Os05g19700Os.47463.1.S1_x_at5/115+11471458..11472447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19700Os.14491.2.S1_x_at3/115+11471458..11472447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19710NANA5+11472629..11473949transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19720NANA5+11479436..11481363transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14763.1.S1_at--213--5671Chr05:11461554..11461578 (25 bp)
GACATCGGTGGTGAACGGCGAAACT
LOC_Os05g19690
OsAffx.14763.1.S1_at--852--7351Chr05:11461544..11461568 (25 bp)
GTGAACGGCGAAACTGTGCAATGGC
LOC_Os05g19690
OsAffx.14763.1.S1_at--463--3431Chr05:11461485..11461509 (25 bp)
CAGATAGCGCGGCTGACCAATGCTC
LOC_Os05g19690
OsAffx.14763.1.S1_at--394--1051Chr05:11461436..11461460 (25 bp)
AGGTGGTGCAGTGGCCGCAATGCCA
LOC_Os05g19690
OsAffx.14763.1.S1_at--485--9231Chr05:11461388..11461412 (25 bp)
TCCAGTGGTCTCTGAGCAAAACCGA
LOC_Os05g19690
OsAffx.14763.1.S1_at--1006--3171Chr05:11461373..11461397 (25 bp)
GCAAAACCGAGGTGACCCCGAGGAG
LOC_Os05g19690
OsAffx.14763.1.S1_at--909--1851Chr05:11461340..11461364 (25 bp)
ACGACGTCGGTTGGCTAGAGGTCAA
LOC_Os05g19690
OsAffx.14763.1.S1_at--1118--8091Chr05:11461315..11461339 (25 bp)
GGACGAGCCTGACCGGTGGGACCTG
LOC_Os05g19690
OsAffx.14763.1.S1_at--638--5831Chr05:11461296..11461320 (25 bp)
GACCTGCGGGAGACACATGGAAGCA
LOC_Os05g19690
OsAffx.14763.1.S1_at--7--2191Chr05:11461284..11461308 (25 bp)
ACACATGGAAGCAACGTGGGTGCAC
LOC_Os05g19690
OsAffx.14763.1.S1_at--613--1491Chr05:11461275..11461299 (25 bp)
AGCAACGTGGGTGCACGTGCGCCTC
LOC_Os05g19690
Target Sequence 
GACATCGGTGGTGAACGGCGAAACTGTGCAATGGCCGGGGAAGGAGACGACGTCACGGTAAAGGGGAAGCAGATAGCGCG
GCTGACCAATGCTCTGGTGTGGCGGCACGGGAGGCTGGAGGTGGTGCAGTGGCCGCAATGCCACTGGTTGCCGGCCGGGC
CCCGCCTCCAGTGGTCTCTGAGCAAAACCGAGGTGACCCCGAGGAGAGGAGACGACGACGTCGGTTGGCTAGAGGTCAAG
GACGAGCCTGACCGGTGGGACCTGCGGGAGACACATGGAAGCAACGTGGGTGCACGTGCGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis