Browse Element(s) Details


Os.20313.1.S1_x_at

Description gb:AK099691.1
DB_XREF= gi:32984900
TID=Os.20313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) germin(oxalate oxidase)-like protein (P0431G06.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073E02, full insert sequence.
FL= gb:AK099691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7229011/11Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os05g196701/11Rhicadhesin receptor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20313.1.S1_x_at--468--8312Chr05:11446793..11447052 (25 bp)
GGCTCGTCCACTTCCAGAAGAACAA
LOC_Os05g19670
Os.20313.1.S1_x_at--921--5351Chr01:42242272..42242296 (25 bp)
GAAGAACAACGGCAACACGCCGGCG
LOC_Os01g72290
Os.20313.1.S1_x_at--570--2751Chr01:42242273..42242297 (25 bp)
AAGAACAACGGCAACACGCCGGCGT
LOC_Os01g72290
Os.20313.1.S1_x_at--220--1431Chr01:42242274..42242298 (25 bp)
AGAACAACGGCAACACGCCGGCGTT
LOC_Os01g72290
Os.20313.1.S1_x_at--697--5431Chr01:42242275..42242299 (25 bp)
GAACAACGGCAACACGCCGGCGTTC
LOC_Os01g72290
Os.20313.1.S1_x_at--747--851Chr01:42242503..42242527 (25 bp)
ATGGCAGCTGAGCTAGCTAGCCCTA
LOC_Os01g72290
Os.20313.1.S1_x_at--771--4851Chr01:42242514..42242538 (25 bp)
GCTAGCTAGCCCTATCGCGATAATA
LOC_Os01g72290
Os.20313.1.S1_x_at--154--10371Chr01:42242648..42242672 (25 bp)
TTTTGTTTTTGAGTCGTCGTCGATC
LOC_Os01g72290
Os.20313.1.S1_x_at--836--511Chr01:42242670..42242694 (25 bp)
ATCGATCGGGTCGTGTCTCGTACTA
LOC_Os01g72290
Os.20313.1.S1_x_at--657--9891Chr01:42242690..42242714 (25 bp)
TACTACGTGTGTGTGGTACGTGGCC
LOC_Os01g72290
Os.20313.1.S1_x_at--781--8451Chr01:42242710..42242734 (25 bp)
TGGCCGGACCTGATCATTACTGTAT
LOC_Os01g72290
Target Sequence 
GGCTCGTCCACTTCCAGAAGAACAACGGCAACACGCCGGCGTTCGCCATCGCCGCCTTGAACAGCCAGCTCCCCGGGACG
CAGTCCATCGCCGCCGCGCTCTTCGGCGCCGCGCCGCCGCTGCCGTCGGACACGCTGGCCAGGGCGTTCCAGGTCGACGG
CGGCATGGTCGAGTTCATCAAGTCCAAGTTCGTCCCGCCCAAATACTAGAATTGCATTGCATGCATGCATACTGCAGGAA
GAACAAGATGGCAGCTGAGCTAGCTAGCCCTATCGCGATAATAATAATTAAGAGGACGTACGTACGTACCGTTAAAAAGT
TTGTGATTTGATTGGTAGGATTTGTGTCAGTGTGTGTTTGTGTTTGTGAGTCGTTTGATTTGTAATTTTTATTTTTGTTT
TTGAGTCGTCGTCGATCGATCGGGTCGTGTCTCGTACTACGTGTGTGTGGTACGTGGCCGGACCTGATCATTACTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20313.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis