Browse Element(s) Details


Os.3769.1.S1_a_at

Description gb:AB037418.1
DB_XREF= gi:9453919
GEN=UMPS2
TID=Os.3769.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3769 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) UMPS2 mRNA for UMP synthase 2, complete cds.
PROD=UMP synthase 2
FL= gb:AB037418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7225011/11Uridine 5'-monophosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0004588molecular_functionorotate phosphoribosyltransferase activity
GO:0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3769.1.S1_a_at--597--9731Chr01:42222391..42222415 (25 bp)
TCAAGTCCAGCGTTCATCCATGCTA
LOC_Os01g72250
Os.3769.1.S1_a_at--932--7631Chr01:42222441..42222465 (25 bp)
GGGAGACTCGCTTGGTCAACAGTAC
LOC_Os01g72250
Os.3769.1.S1_a_at--980--2451Chr01:42222466..42222774 (25 bp)
AACACTCCTTACTCTGTCATAAACG
LOC_Os01g72250
Os.3769.1.S1_a_at--703--3031Chr01:42222825..42222849 (25 bp)
AATCCTGCTGAGACCGCGAGAGAGT
LOC_Os01g72250
Os.3769.1.S1_a_at--758--851Chr01:42222863..42222887 (25 bp)
ATGGCATGCTTACCAATCCAGCTTA
LOC_Os01g72250
Os.3769.1.S1_a_at--685--1471Chr01:42222893..42222917 (25 bp)
AGAATGCTGTAAGGTCTCTCCCATT
LOC_Os01g72250
Os.3769.1.S1_a_at--592--6071Chr01:42222969..42222993 (25 bp)
GAGTATACGCATGCTCTATCATCGC
LOC_Os01g72250
Os.3769.1.S1_a_at--857--4811Chr01:42222981..42223005 (25 bp)
GCTCTATCATCGCTGTGGTTCGTAA
LOC_Os01g72250
Os.3769.1.S1_a_at--1056--7891Chr01:42222997..42223021 (25 bp)
GGTTCGTAATTCACATGCCCTATAT
LOC_Os01g72250
Os.3769.1.S1_a_at--215--611Chr01:42223011..42223035 (25 bp)
ATGCCCTATATTGACACGCACTATC
LOC_Os01g72250
Os.3769.1.S1_a_at--708--5111Chr01:42223028..42223052 (25 bp)
GCACTATCCCAGCAACAATTTCGTT
LOC_Os01g72250
Target Sequence 
TCAAGTCCAGCGTTCATCCATGCTACTCCTGGAGTTCAGTTGGTTGCTGGGGGAGACTCGCTTGGTCAACAGTACAACAC
TCCTTACTCTGTCATAAACGACAGAGGCAGCGACATAATTATAGTCGGTCGTGGGATTATAAGGGCGAACAATCCTGCTG
AGACCGCGAGAGAGTACCGCATCCAAGGATGGCATGCTTACCAATCCAGCTTATCATGAGAATGCTGTAAGGTCTCTCCC
ATTCTGTAACACGAATGTAAGGGCATTCAGGCGATTGACTGACGCAATAAAAGAGAGTATACGCATGCTCTATCATCGCT
GTGGTTCGTAATTCACATGCCCTATATTGACACGCACTATCCCAGCAACAATTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3769.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis