Browse Element(s) Details


Os.52785.1.S1_at

Description gb:AK069239.1
DB_XREF= gi:32979263
TID=Os.52785.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010G04, full insert sequence.
FL= gb:AK069239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7228011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52785.1.S1_at--657--6271Chr01:42232800..42232824 (25 bp)
GATGTCAACCGTGGGATCGCCATGC
LOC_Os01g72280
Os.52785.1.S1_at--392--9891Chr01:42232614..42232638 (25 bp)
TACTTGCTGGCTGTTGGGCATTACA
LOC_Os01g72280
Os.52785.1.S1_at--59--2971Chr01:42232587..42232611 (25 bp)
AATGGTGACTATCCCAGGAGCCGGC
LOC_Os01g72280
Os.52785.1.S1_at--14--8271Chr01:42232565..42232589 (25 bp)
GGCAGCTTCTTGAACACTGTTTGGA
LOC_Os01g72280
Os.52785.1.S1_at--609--7591Chr01:42231891..42231915 (25 bp)
GGGCAGGCCCTGTCTTTGAAGAAGA
LOC_Os01g72280
Os.52785.1.S1_at--1021--9072Chr09:17001649..17001947 (25 bp)
TGCTGCTGTTGCTCGGAAGAACTGA
NONE
Os.52785.1.S1_at--609--6191Chr01:42231298..42231322 (25 bp)
GAGGCATAGCGGTTCCAGATTGATT
LOC_Os01g72280
Os.52785.1.S1_at--492--1471Chr01:42231200..42231224 (25 bp)
AGAATTCCCTCTTTATTGACACAAT
LOC_Os01g72280
Os.52785.1.S1_at--577--6471Chr01:42231163..42231187 (25 bp)
GATACAGTATGCTCCGAATGCTTTA
LOC_Os01g72280
Os.52785.1.S1_at--236--5271Chr01:42231148..42231172 (25 bp)
GAATGCTTTACAATCTCACCTCCAT
LOC_Os01g72280
Os.52785.1.S1_at--869--3111Chr01:42231103..42231127 (25 bp)
AATATTTTCCACGTGATCTTTCAGA
LOC_Os01g72280
Target Sequence 
GATGTCAACCGTGGGATCGCCATGCTCCAAGCATCTTTGGGTGGCTCCAAGAGTCCACTGGAGGCAAGGGAGAAGCTCTA
CTTGCTGGCTGTTGGGCATTACAGGAATGGTGACTATCCCAGGAGCCGGCAGCTTCTTGAACACTGTTTGGAGATTCAAC
CTGGCTGGGGGCAGGCCCTGTCTTTGAAGAAGACAGTTGAAGATAAAATTGCTAAAGATGGTGTGATTGGCATAGGTATA
GCCACAACAGCTGTTGGACTGCTGGTTGGGATAGCTGCTGCTGTTGCTCGGAAGAACTGAGGCATAGCGGTTCCAGATTG
ATTTATGGGAATTGAGATTTCTGTCGTCAGATACTCTTTTATGCTGGTGACATTTTTGTTCAAGTTCTAGTCTGCAAGAA
TTCCCTCTTTATTGACACAATTTAAGGTAGTATGATACAGTATGCTCCGAATGCTTTACAATCTCACCTCCATCTCATAA
TTCTCTATCGGACAATATTTTCCACGTGATCTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis