Browse Element(s) Details


Os.48364.1.S1_at

Description gb:AK069717.1
DB_XREF= gi:32979741
TID=Os.48364.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034D08, full insert sequence.
FL= gb:AK122134.1 gb:AK069717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7231011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48364.1.S1_at--202--4511Chr01:42251869..42251893 (25 bp)
GCCGATCCGGGCTGTAATGTAGCTC
LOC_Os01g72310
Os.48364.1.S1_at--1155--8291Chr01:42251878..42251902 (25 bp)
GGCTGTAATGTAGCTCGGGCTCGTT
LOC_Os01g72310
Os.48364.1.S1_at--661--9991Chr01:42251888..42251912 (25 bp)
TAGCTCGGGCTCGTTTGGAGTTGCC
LOC_Os01g72310
Os.48364.1.S1_at--1152--10691Chr01:42251908..42251932 (25 bp)
TTGCCTGCTGCCTTGTGGGATGACG
LOC_Os01g72310
Os.48364.1.S1_at--1012--8631Chr01:42251923..42251947 (25 bp)
TGGGATGACGCCACGTCGCCCGGTC
LOC_Os01g72310
Os.48364.1.S1_at--480--7791Chr01:42251944..42251968 (25 bp)
GGTCCATTGCCGGTCAGAACTGAAG
LOC_Os01g72310
Os.48364.1.S1_at--735--3271Chr01:42251963..42251987 (25 bp)
CTGAAGGGCAGGCAAGGCTATTCCA
LOC_Os01g72310
Os.48364.1.S1_at--75--931Chr01:42251977..42252001 (25 bp)
AGGCTATTCCAAGGCTCTGATTATA
LOC_Os01g72310
Os.48364.1.S1_at--1023--2471Chr01:42252004..42252028 (25 bp)
AACAGCCGGTGAGAATTTAGAAAAG
LOC_Os01g72310
Os.48364.1.S1_at--192--10571Chr01:42252035..42252059 (25 bp)
TTCTTAGCTTGTTTCTGGTTTAATG
LOC_Os01g72310
Os.48364.1.S1_at--681--11Chr01:42252086..42252110 (25 bp)
ATTTGAACCGTTTGAGGGAGCTAGT
LOC_Os01g72310
Target Sequence 
GCCGATCCGGGCTGTAATGTAGCTCGGGCTCGTTTGGAGTTGCCTGCTGCCTTGTGGGATGACGCCACGTCGCCCGGTCC
ATTGCCGGTCAGAACTGAAGGGCAGGCAAGGCTATTCCAAGGCTCTGATTATAAAAACAGCCGGTGAGAATTTAGAAAAG
TCAAGTTTCTTAGCTTGTTTCTGGTTTAATGTTTGATTGTGAATAGGGTGGGTGAAAATTTGAACCGTTTGAGGGAGCTA
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis