Browse Element(s) Details


OsAffx.11827.1.S1_x_at

Description tigr:9629.m07152
TID=OsAffx.11827.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cupin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7230011/11Germin-like protein subfamily 2 member 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11827.1.S1_x_at--563--5691Chr01:42244832..42244853 (22 bp)
GACTACAAGTCGCTTCAAGGCCCGC
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--361--10491Chr01:42244845..42245155 (25 bp)
TTCAAGGCCCGCTGAGGGTGAACGG
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--548--5431Chr01:42245150..42245174 (25 bp)
GAACGGGTTCCCGTGCAAGCCGGAG
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--248--8151Chr01:42245214..42245238 (25 bp)
GGAAAGCCGGCCGACGTGTACTCCG
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--205--1911Chr01:42245227..42245251 (25 bp)
ACGTGTACTCCGGCAACCCGATGGG
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--453--1931Chr01:42245398..42245422 (25 bp)
ACGGCCTCCTCGAGGTCGGCTTCGT
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--92--4651Chr01:42245464..42245488 (25 bp)
GCGTCGTCCCCAAGGGCGGCGTCTT
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--290--9271Chr01:42245506..42245530 (25 bp)
TCCTCCACTACGAGCGGAGCGTCGG
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--535--5411Chr01:42245534..42245558 (25 bp)
GAAGCCCGCCGTGGCGATCTCAGCG
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--825--451Chr01:42245550..42245574 (25 bp)
ATCTCAGCGTTCGACAGCCAGCTCC
LOC_Os01g72300
OsAffx.11827.1.S1_x_at--441--4511Chr01:42245592..42245616 (25 bp)
GCCGACGCGCTGTTCGGCTCGTCGT
LOC_Os01g72300
Target Sequence 
GACTACAAGTCGCTTCAAGGCCCGCTGAGGGTGAACGGGTTCCCGTGCAAGCCGGAGGCGAACGTGACGGCGGAGGACTT
CTTCTTCCCGGGGCTGGGAAAGCCGGCCGACGTGTACTCCGGCAACCCGATGGGGTCGGCGGTGACGGCGGCGACGGTGG
AGAGGATCCCGGGGCTGAACACGCTGGGCGTGTCCATGGCGCGCGTCGACTACGCGCCGTGGGGCGGCGCCAACCCGCCG
CACTCCCACCCGCGCGCCACCGAGATCCTCTTCGTCGCCGACGGCCTCCTCGAGGTCGGCTTCGTCGTCGCCACGGCGGC
GCCGGCGAGCAGCAGGCTCATCACCCGCGTCGTCCCCAAGGGCGGCGTCTTCGTCTTCCCCCGCGGCCTCCTCCACTACG
AGCGGAGCGTCGGCGAGAAGCCCGCCGTGGCGATCTCAGCGTTCGACAGCCAGCTCCCCGGAACGCAGGCCGCCGCCGAC
GCGCTGTTCGGCTCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis