Browse Element(s) Details


Os.34890.1.S1_x_at

Description gb:CB675514
DB_XREF= gi:29679239
DB_XREF=OSJNEe11E20.r
CLONE=OSJNEe11E20
TID=Os.34890.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.34890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.3 (P0431G06.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7231011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34890.1.S1_x_at--449--8211Chr01:42250986..42251010 (25 bp)
GGAATGTACAGTCCCATGCCATTAG
LOC_Os01g72310
Os.34890.1.S1_x_at--612--6291Chr01:42251160..42251184 (25 bp)
GATGATCCAGCATGCATGGCCTTAG
LOC_Os01g72310
Os.34890.1.S1_x_at--689--5051Chr01:42251199..42251223 (25 bp)
GCAGCACTGGGCCTTGATTTGAGTT
LOC_Os01g72310
Os.34890.1.S1_x_at--418--4851Chr01:42251428..42251452 (25 bp)
GCTACTCGTCCCATATTTGTTGAGA
LOC_Os01g72310
Os.34890.1.S1_x_at--223--4671Chr01:42251463..42251487 (25 bp)
GCGTGGTACCATCGAAGAGCAAATG
LOC_Os01g72310
Os.34890.1.S1_x_at--577--9871Chr01:42251570..42251593 (24 bp)
TACAGGATTCCAATGCTTGCAGACA
LOC_Os01g72310
Os.34890.1.S1_x_at--525--8831Chr01:42251621..42251645 (25 bp)
TGATAATGAAGGTGCTCGGCCTCAC
LOC_Os01g72310
Os.34890.1.S1_x_at--293--2351Chr01:42251668..42251692 (25 bp)
AAAGCAGTTATCTGGCGCAACTCAG
LOC_Os01g72310
Os.34890.1.S1_x_at--242--8971Chr01:42251698..42251722 (25 bp)
TGAAAGGATCTGACGCGGCGGAAAA
LOC_Os01g72310
Os.34890.1.S1_x_at--486--8831Chr01:42251758..42251782 (25 bp)
TGATTACCTCTGTTTCCTTCAATAT
LOC_Os01g72310
Os.34890.1.S1_x_at--796--10771Chr01:42251782..42251806 (25 bp)
TTGAGGCCCTTCAATTCTTTTGATA
LOC_Os01g72310
Target Sequence 
GGAATGTACAGTCCCATGCCATTAGGCAGTAAGAGAAGTTCACTGACGAAGTTCAAAGATGATCCAGCATGCATGGCCTT
AGTCATGGATGGAACTGCAGCACTGGGCCTTGATTTGAGTTTTGTCTCTTATGTTTTTCTGATGGAACCAATATGGGATA
GGAGTATGGAGGAGCAAGTTATTAGTCGTGCACATCGTATGGGTGCTACTCGTCCCATATTTGTTGAGACTTTGGCCATG
CGTGGTACCATCGAAGAGCAAATGTTAAAACTTTTACAGGATTCCAATGCTTGCAGACAAATGGTGAATAAAGGAACAAG
CAGCACTGATAATGAAGGTGCTCGGCCTCACCGGAGCCTGCATGATTTTGCGGAAAGCAGTTATCTGGCGCAACTCAGCT
TTGTGAAAGGATCTGACGCGGCGGAAAAATTATAGTTGCTAACACTAACAAAAATTTCTTTCTTGATTACCTCTGTTTCC
TTCAATATTGAGGCCCTTCAATTCTTTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34890.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis