Browse Element(s) Details

Os.34890.1.S1_at

Description

gb:CB675514
DB_XREF= gi:29679239
DB_XREF=OSJNEe11E20.r
CLONE=OSJNEe11E20
TID=Os.34890.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.34890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.3 (P0431G06.3), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g72310	11/11	CW-type Zinc Finger family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g72250	Os.3769.1.S1_a_at	11/11	1	+	42219537..42223089	Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260	NA	NA	1	+	42223488..42225122	Cytochrome P450 family protein, expressed
LOC_Os01g72270	NA	NA	1	+	42226851..42228500	Cytochrome P450 family protein, expressed
LOC_Os01g72280	Os.52785.1.S1_at	11/11	1	+	42231085..42234298	expressed protein
LOC_Os01g72290	Os.20313.1.S1_s_at	11/11	1	+	42241533..42242773	Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290	Os.20313.1.S1_x_at	11/11	1	+	42241533..42242773	Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290	Os.20313.2.S1_x_at	11/11	1	+	42241533..42242773	Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290	OsAffx.25546.1.S1_s_at	1/11	1	+	42241533..42242773	Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300	OsAffx.11827.1.S1_x_at	11/11	1	+	42244715..42245955	Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310	Os.34890.1.S1_x_at	11/11	1	+	42246479..42252151	CW-type Zinc Finger family protein, expressed
LOC_Os01g72310	Os.34890.1.S1_at	11/11	1	+	42246479..42252151	CW-type Zinc Finger family protein, expressed
LOC_Os01g72310	Os.48364.1.S1_at	11/11	1	+	42246479..42252151	CW-type Zinc Finger family protein, expressed
LOC_Os01g72320	Os.6169.1.S1_at	11/11	1	+	42252446..42258451	zinc finger protein, putative, expressed
LOC_Os01g72330	Os.15908.1.S1_s_at	11/11	1	+	42275801..42279237	Two-component response regulator ARR8, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006281	biological_process	DNA repair
GO:0003677	molecular_function	DNA binding
GO:0004386	molecular_function	helicase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34890.1.S1_at--222--467	1	Chr01:42251463..42251487 (25 bp)	GCGTGGTACCATCGAAGAGCAAATG	LOC_Os01g72310
Os.34890.1.S1_at--408--785	1	Chr01:42251467..42251491 (25 bp)	GGTACCATCGAAGAGCAAATGTTAA	LOC_Os01g72310
Os.34890.1.S1_at--938--893	1	Chr01:42251488..42251583 (25 bp)	TTAAAACTTTTACAGGATTCCAATG	LOC_Os01g72310
Os.34890.1.S1_at--395--205	1	Chr01:42251493..42251588 (25 bp)	ACTTTTACAGGATTCCAATGCTTGC	LOC_Os01g72310
Os.34890.1.S1_at--576--987	1	Chr01:42251570..42251593 (24 bp)	TACAGGATTCCAATGCTTGCAGACA	LOC_Os01g72310
Os.34890.1.S1_at--1080--347	1	Chr01:42251571..42251595 (25 bp)	CAGGATTCCAATGCTTGCAGACAAA	LOC_Os01g72310
Os.34890.1.S1_at--533--793	1	Chr01:42251573..42251597 (25 bp)	GGATTCCAATGCTTGCAGACAAATG	LOC_Os01g72310
Os.34890.1.S1_at--454--319	1	Chr01:42251579..42251603 (25 bp)	CAATGCTTGCAGACAAATGGTGAAT	LOC_Os01g72310
Os.34890.1.S1_at--541--367	1	Chr01:42251693..42251717 (25 bp)	CTTTGTGAAAGGATCTGACGCGGCG	LOC_Os01g72310
Os.34890.1.S1_at--241--897	1	Chr01:42251698..42251722 (25 bp)	TGAAAGGATCTGACGCGGCGGAAAA	LOC_Os01g72310
Os.34890.1.S1_at--483--947	1	Chr01:42251706..42251730 (25 bp)	TCTGACGCGGCGGAAAAATTATAGT	LOC_Os01g72310

Target Sequence

GCGTGGTACCATCGAAGAGCAAATGTTAAAACTTTTACAGGATTCCAATGCTTGCAGACAAATGGTGAATAAAGGAACAA
GCAGCACTGATAATGAAGGTGCTCGGCCTCACCGGAGCCTGCATGATTTTGCGGAAAGCAGTTATCTGGCGCAACTCAGC
TTTGTGAAAGGATCTGACGCGGCGGAAAAATTATAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis