Browse Element(s) Details


Os.4468.1.S1_at

Description gb:AF210324.1
DB_XREF= gi:7381461
GEN=UMPS1
TID=Os.4468.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4468 (NCBI UniGene Cluster)
DEF=Oryza sativa clone C26554 UMP synthase (UMPS1) mRNA, complete cds.
PROD=UMP synthase
FL= gb:AB031395.1 gb:AF210323.1 gb:AK069565.1 gb:AF210324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7224011/11Uridine 5'-monophosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0004588molecular_functionorotate phosphoribosyltransferase activity
GO:0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4468.1.S1_at--903--1331Chr01:42216050..42216074 (25 bp)
AGAGGGCTGCTTTTGCTTGCTGAAA
LOC_Os01g72240
Os.4468.1.S1_at--650--4751Chr01:42216068..42216092 (25 bp)
GCTGAAATGAGCTCGGCTGGCAACC
LOC_Os01g72240
Os.4468.1.S1_at--380--531Chr01:42216166..42216190 (25 bp)
ATCCGTTAATCCAGCATCTTGGTCA
LOC_Os01g72240
Os.4468.1.S1_at--1157--411Chr01:42216181..42216205 (25 bp)
ATCTTGGTCAGTTGCGCCATCAAGT
LOC_Os01g72240
Os.4468.1.S1_at--935--2851Chr01:42216202..42216226 (25 bp)
AAGTCCAGCATTTATCCATGCCACT
LOC_Os01g72240
Os.4468.1.S1_at--418--4371Chr01:42216222..42216246 (25 bp)
CCACTCCTGGAGTGCAGATGGTTTC
LOC_Os01g72240
Os.4468.1.S1_at--961--6171Chr01:42216249..42216273 (25 bp)
GAGGAGATGCTCTTGGTCAACAGTA
LOC_Os01g72240
Os.4468.1.S1_at--26--7051Chr01:42216271..42216291 (21 bp)
GTACAATACCCCTCATTCTGTTATA
LOC_Os01g72240
Os.4468.1.S1_at--283--1171Chr01:42217077..42217101 (25 bp)
AGTAATCCAGCCGAGACCGCGAGGG
LOC_Os01g72240
Os.4468.1.S1_at--1040--3551Chr01:42217126..42217150 (25 bp)
CATACCAATCCAGCTTGCCATGAGA
LOC_Os01g72240
Os.4468.1.S1_at--1115--7133Chr04:9241069..9241089 (21 bp)
GTCTATAATACCCTCAGCTATCTGT
NONE
Target Sequence 
AGAGGGCTGCTTTTGCTTGCTGAAATGAGCTCGGCTGGCAACCTTGCTCATGGAGAGTACACTGCTGCAGCTGTAAAGAT
TGCTGAGCAACATTCTGATTTTGTAATTGGATTTATATCCGTTAATCCAGCATCTTGGTCAGTTGCGCCATCAAGTCCAG
CATTTATCCATGCCACTCCTGGAGTGCAGATGGTTTCTGGAGGAGATGCTCTTGGTCAACAGTACAATACCCCTCATTCT
GTTATAAACGACAGAGGCAGTGACATAATTATAGTCGGACGAGGGATTATAAAGGCGAGTAATCCAGCCGAGACCGCGAG
GGAGTACCGCATCCAAGGGTGGGGAGCATACCAATCCAGCTTGCCATGAGAAATTGAGAATGTGTTTAGGCCATGTTTGT
TTCAGCTTATGATTATTATAATCTAGATTATTAAGCCAGATTGCTATAAGCTGGATTATAATAAGCTGACATAGAATAAG
CTGTGAGTTGTTTGTTTGTCTGGATTATTGGAGGCATGGATTATTGGGTTTGAAAGGCTAAAGTCTATAATACCCTCAGC
TATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis