Browse Element(s) Details


Os.24603.1.A1_at

Description gb:AK107123.1
DB_XREF= gi:32992332
TID=Os.24603.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B08, full insert sequence.
FL= gb:AK107123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7219011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24603.1.A1_at--11--5031Chr01:42189972..42189996 (25 bp)
GCAGTGAACAAATTAGCCCGCGCTC
LOC_Os01g72190
Os.24603.1.A1_at--871--131Chr01:42189983..42190007 (25 bp)
ATTAGCCCGCGCTCAGAAGAGGAAA
LOC_Os01g72190
Os.24603.1.A1_at--359--5571Chr01:42190004..42190028 (25 bp)
GAAAGTTGAGATGCTTGTCCAGGCC
LOC_Os01g72190
Os.24603.1.A1_at--297--2331Chr01:42190076..42190100 (25 bp)
AAAGTCTTCGCAACCATGCAGATGA
LOC_Os01g72190
Os.24603.1.A1_at--871--8511Chr01:42190235..42190259 (25 bp)
TGGAACTAATCACCATCTCGAGGTT
LOC_Os01g72190
Os.24603.1.A1_at--986--6151Chr01:42190254..42190278 (25 bp)
GAGGTTCTAACTCAGTGGTCACTGC
LOC_Os01g72190
Os.24603.1.A1_at--827--10211Chr01:42190281..42190305 (25 bp)
TATTAGTGCCAGAGACCTGCTCGAC
LOC_Os01g72190
Os.24603.1.A1_at--1145--5891Chr01:42190313..42190337 (25 bp)
GAGCTGCTTAATATCACTGAGGTGA
LOC_Os01g72190
Os.24603.1.A1_at--620--7591Chr01:42190401..42190425 (25 bp)
GGGCATGTACATTTAAGTCTCGTGT
LOC_Os01g72190
Os.24603.1.A1_at--234--1151Chr01:42190416..42190440 (25 bp)
AGTCTCGTGTGCTCTTGTCGATATA
LOC_Os01g72190
Os.24603.1.A1_at--817--7992Chr10:22830096..22830120 (25 bp)
GGATGTATTCCTTGGGCAAAGATCA
NONE
Target Sequence 
GCAGTGAACAAATTAGCCCGCGCTCAGAAGAGGAAAGTTGAGATGCTTGTCCAGGCCTTTGAAACTGTTCAACAGGATGA
TGATAAGAAAAGCATCACACTTACAAAGTCTTCGCAACCATGCAGATGACTNCTNTTAGAGGCCTTGCACNTTAGCTGGA
ACTAATCACCATCTCGAGGTTCTAACTCAGTGGTCACTGCAATATTAGTGCCAGAGACCTGCTCGACAAGGATAGAGCTG
CTTAATATCACTGAGGTGATGAGATCTCGATCTGGTAGTTGAGCTTTATGGAGCACAATNAGTTGATTAGTGTAGTACAT
TAGGGCATGTACATTTAAGTCTCGTGTGCTCTTGTCGATATATTAGTAGTGATCAATAATAGTAAGTGTACGAGACTTGC
GAAGTGGCAAGAGTGTTGGGATGTATTCCTTGGGCAAAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24603.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis