Browse Element(s) Details


Os.52054.1.S1_at

Description gb:AK064627.1
DB_XREF= gi:32974645
TID=Os.52054.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F04, full insert sequence.
FL= gb:AK064627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7216011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72090OsAffx.2460.1.S1_x_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090Os.15397.1.S1_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100Os.20355.1.S1_at11/111+42152913..42154005Polcalcin, putative, expressed
LOC_Os01g72110NANA1+42157883..42161287Transposable element protein, putative, MuDR
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52054.1.S1_at--143--9471Chr01:42174859..42174883 (25 bp)
TCTGGGCCCAATTCATCGATGATAA
LOC_Os01g72160
Os.52054.1.S1_at--404--6291Chr01:42174876..42175374 (25 bp)
GATGATAAGTTCTCGAGGCCGTTCT
LOC_Os01g72160
Os.52054.1.S1_at--955--4231Chr01:42175368..42175392 (25 bp)
CCGTTCTGGCTGTCGTTCTGGATGG
LOC_Os01g72160
Os.52054.1.S1_at--610--1911Chr01:42175465..42175489 (25 bp)
ACGGCGGCAACAAGAGGTTCTTCGG
LOC_Os01g72160
Os.52054.1.S1_at--406--5811Chr01:42175494..42175518 (25 bp)
GACGCCATTGGCCTCGTGGACATCG
LOC_Os01g72160
Os.52054.1.S1_at--766--1891Chr01:42175624..42175648 (25 bp)
ACGTCAACGATGGAGCCGTGAGGCA
LOC_Os01g72160
Os.52054.1.S1_at--61--1531Chr01:42175659..42175683 (25 bp)
AGCAGAGATGAACTCGTCGCCTTGT
LOC_Os01g72160
Os.52054.1.S1_at--105--2791Chr01:42175696..42175720 (25 bp)
AAGAGGCGTATACACTGCTGGCCAA
LOC_Os01g72160
Os.52054.1.S1_at--670--10131Chr01:42175770..42175794 (25 bp)
TATGCGTATGTGTTTCTTTTTCAAC
LOC_Os01g72160
Os.52054.1.S1_at--1051--3131Chr01:42175814..42175838 (25 bp)
AATTATCTGTTCTGGTATCTGCAAT
LOC_Os01g72160
Os.52054.1.S1_at--471--1571Chr01:42175844..42175868 (25 bp)
AGCTACTGTTTTTCAATGTGTCGTT
LOC_Os01g72160
Target Sequence 
TCTGGGCCCAATTCATCGATGATAAGTTCTCGAGGCCGTTCTGGCTGTCGTTCTGGATGGAGGACGGGGAGAAGAAGGAG
GCGTTCGTGAGGGAAGCGAAGGAGAATCTGCGGCCGCTGGAGGCGCAGCTCGACGGCGGCAACAAGAGGTTCTTCGGCGG
CGACGCCATTGGCCTCGTGGACATCGCCGCCAGTGGGCTGGCTCACTGGGTCGGGGTGTTCGAGGAGGTCACCGGCGTGA
GCTTGGTGAGCGAGCGGGAGTTCCCCGCGCTGTGCCGGTGGTCGCAGCGCTACGTCAACGATGGAGCCGTGAGGCAGTGC
TTGCCGAGCAGAGATGAACTCGTCGCCTTGTTCACTGCAAACAAAGAGGCGTATACACTGCTGGCCAAGGCAAAGTTGCA
GAAATAATTTTATTACTCGTGAATTTCGATGCTGGAATATGCGTATGTGTTTCTTTTTCAACATGGAATAAATTGCTAAT
AAATTATCTGTTCTGGTATCTGCAATTTATTAGCTACTGTTTTTCAATGTGTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis