Browse Element(s) Details


OsAffx.24011.1.S1_at

Description tigr:9629.m07137
TID=OsAffx.24011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutathione S-transferase, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7215011/11glutathione S-transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72090OsAffx.2460.1.S1_x_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090Os.15397.1.S1_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100Os.20355.1.S1_at11/111+42152913..42154005Polcalcin, putative, expressed
LOC_Os01g72110NANA1+42157883..42161287Transposable element protein, putative, MuDR
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24011.1.S1_at--752--3691Chr01:42173431..42173455 (25 bp)
CTAGCAACCCTGTCCACAAGAAGGT
LOC_Os01g72150
OsAffx.24011.1.S1_at--893--5911Chr01:42173479..42173503 (25 bp)
GAGCTATCTGCGAATCACTTGTCAT
LOC_Os01g72150
OsAffx.24011.1.S1_at--241--1931Chr01:42173571..42173595 (25 bp)
ACGGCTCGTTTCTGGGCTCAATTCA
LOC_Os01g72150
OsAffx.24011.1.S1_at--684--6451Chr01:42173598..42173622 (25 bp)
GATCACAAGGCAAATCTCTTCATGT
LOC_Os01g72150
OsAffx.24011.1.S1_at--63--9631Chr01:42173617..42173641 (25 bp)
TCATGTTGTTGCATCATTGCGTTCA
LOC_Os01g72150
OsAffx.24011.1.S1_at--672--71Chr01:42173632..42173733 (25 bp)
ATTGCGTTCATTGCACGTTGCCGTT
LOC_Os01g72150
OsAffx.24011.1.S1_at--963--1431Chr01:42173793..42173817 (25 bp)
AGAACCTGTCGCTACTGGAGGCACA
LOC_Os01g72150
OsAffx.24011.1.S1_at--352--5291Chr01:42173880..42173904 (25 bp)
GAATGGCTCACTGGATCGGTGTGCT
LOC_Os01g72150
OsAffx.24011.1.S1_at--82--1871Chr01:42173943..42173967 (25 bp)
ACGACGACGAGTATCCTTCGCTGCA
LOC_Os01g72150
OsAffx.24011.1.S1_at--741--2091Chr01:42173991..42174015 (25 bp)
ACATCGACGCCGTGAAGCTGAGTCT
LOC_Os01g72150
OsAffx.24011.1.S1_at--1018--5351Chr01:42174026..42174050 (25 bp)
GAAGAACTCGTTGCCTTCTACACGA
LOC_Os01g72150
Target Sequence 
CTAGCAACCCTGTCCACAAGAAGGTCCCCGTCCTCCTCGATGGCGGCCGAGCTATCTGCGAATCACTTGTCATCGTCGAG
TACGTCGACGACGCATTCGACGGCCCGCCCATCCTACCTGCCGACCCCTATGACCGCGCCACGGCTCGTTTCTGGGCTCA
ATTCATCGATCACAAGGCAAATCTCTTCATGTTGTTGCATCATTGCGTTCATTGCACGTTGCCGTTGTTGCTGGCCCTGT
GGCTGGACGGTGAGGAGCAGAAGGGGTTTCTGAAGGAGACGAAGGAGAACCTGTCGCTACTGGAGGCACAGCTCGAGGGG
AAGAGGTTCTTTGCCGGCGACGCCGTGGGCTACCTCGACGTCGCCGCCGGCGGAATGGCTCACTGGATCGGTGTGCTCGA
GGAGGTCACCGGAGTGAGCGTGATCGGCAGTGAGGACGACGACGAGTATCCTTCGCTGCAGCGGTGGATCAAGGAGTACG
CCAACATCGACGCCGTGAAGCTGAGTCTGCCGGATAGAGAAGAACTCGTTGCCTTCTACACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis