Browse Element(s) Details


OsAffx.2460.1.S1_x_at

Description tigr:9629.m07132
TID=OsAffx.2460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7209011/11Ferredoxin-dependent bilin reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72049Os.54185.1.S1_at11/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72049Os.52862.1.S1_at10/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72070NANA1+42135362..42136420retrotransposon protein, putative, unclassified
LOC_Os01g72080Os.12000.1.S1_at11/111+42145130..42146259EF hand family protein, expressed
LOC_Os01g72090OsAffx.2460.1.S1_x_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090Os.15397.1.S1_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100Os.20355.1.S1_at11/111+42152913..42154005Polcalcin, putative, expressed
LOC_Os01g72110NANA1+42157883..42161287Transposable element protein, putative, MuDR
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010019biological_processchloroplast-nucleus signaling pathway
GO:0010024biological_processphytochromobilin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0050619molecular_functionphytochromobilin:ferredoxin oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2460.1.S1_x_at--409--71Chr01:42151089..42151113 (25 bp)
ATTGCTTCGCAGCTTGACAATCGAG
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--222--251Chr01:42150623..42150643 (21 bp)
ATATCAGGTTCTTGACTTTGCCGCT
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--165--10711Chr01:42150606..42150630 (25 bp)
TTGCCGCTTTCTCTGAACCTGAATA
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--638--1871Chr01:42150582..42150606 (25 bp)
ACGATCTTCCTATATTTTGCGCCAA
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--931--4551Chr01:42150564..42150588 (25 bp)
GCGCCAACGTTTTTACAACTCATGC
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--19--6651Chr01:42150419..42150553 (25 bp)
GTTGTATTGGACCTCAATCCTCTAT
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--896--8031Chr01:42150352..42150376 (25 bp)
GGAGTATAATGCCTCTTGTACACAA
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--447--2831Chr01:42149947..42150353 (25 bp)
AAGTATAACGAGGTCTGGCTTGAAT
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--947--3911Chr01:42149684..42149708 (25 bp)
CTGGCTATCCCCTTTTGAAGAAGTT
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--630--8571Chr01:42149482..42149506 (25 bp)
TGGATTATTTCCCTGAATACGCCCG
LOC_Os01g72090
OsAffx.2460.1.S1_x_at--1111--9531Chr01:42149414..42149438 (25 bp)
TCTTTTGAAACTAGGCCTTGGGACG
LOC_Os01g72090
Target Sequence 
ATTGCTTCGCAGCTTGACAATCGAGAAGAAAAACTCATATCAGGTTCTTGACTTTGCCGCTTTCTCTGAACCTGAATACG
ATCTTCCTATATTTTGCGCCAACGTTTTTACAACTCATGCACAAAGTATTGTTGTATTGGACCTCAATCCTCTATATGAT
ACTACAGTGCACAAGGATTACAAAGATAAGTACTATAGGAGTATAATGCCTCTTGTACACAAGTATAACGAGGTCTGGCT
TGAATTAATGGACCAAGCAATTAAAGAAAATAACAAAGCAACAATTGCTCGTAACCAAGAAGAACAACATAAATATCTCA
CATGGAGGGCTGAGAAGGATCCTGGCTATCCCCTTTTGAAGAAGTTAATTGGTGAAAGTCGTGCCGAGGATCTGGTGATG
GAGTTTCTGTTTGAAGGAGTAAATACTCTTGGAACAAAATCATTTCTGGATTATTTCCCTGAATACGCCCGTGATGATGG
GTCAGTGAACAAGAAAAGGAGTATGATCGGCAAGTCTTTTGAAACTAGGCCTTGGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2460.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis