Browse Element(s) Details


Os.12000.1.S1_at

Description gb:AK072758.1
DB_XREF= gi:32982781
TID=Os.12000.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142M19, full insert sequence.
FL= gb:AK072758.1 gb:AK058802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7208011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72049Os.54185.1.S1_at11/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72049Os.52862.1.S1_at10/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72070NANA1+42135362..42136420retrotransposon protein, putative, unclassified
LOC_Os01g72080Os.12000.1.S1_at11/111+42145130..42146259EF hand family protein, expressed
LOC_Os01g72090OsAffx.2460.1.S1_x_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090Os.15397.1.S1_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100Os.20355.1.S1_at11/111+42152913..42154005Polcalcin, putative, expressed
LOC_Os01g72110NANA1+42157883..42161287Transposable element protein, putative, MuDR
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12000.1.S1_at--478--8291Chr01:42145810..42145834 (25 bp)
GGCTTCGTCGGGTTCCAGGACTTCG
LOC_Os01g72080
Os.12000.1.S1_at--448--1951Chr01:42145880..42145904 (25 bp)
ACGGCCCGAGATCGTGGTGATCCAT
LOC_Os01g72080
Os.12000.1.S1_at--59--4591Chr01:42145942..42145966 (25 bp)
GCGCTCTGATGTGGTGTGCTTCAAC
LOC_Os01g72080
Os.12000.1.S1_at--1162--10211Chr01:42145971..42145995 (25 bp)
TTTGGCGCGCACTAGACGATGGAAA
LOC_Os01g72080
Os.12000.1.S1_at--5--5091Chr01:42146004..42146028 (25 bp)
GCACTACTAGATGCGCTGCTAATTA
LOC_Os01g72080
Os.12000.1.S1_at--388--4571Chr01:42146016..42146040 (25 bp)
GCGCTGCTAATTAAGTACTCTACTA
LOC_Os01g72080
Os.12000.1.S1_at--812--4591Chr01:42146117..42146141 (25 bp)
GCGAATGCTTCGTTCTTTCAATTTT
LOC_Os01g72080
Os.12000.1.S1_at--1002--8071Chr01:42146170..42146194 (25 bp)
GGAGCTGTAAGCCTAACGTTGCTGT
LOC_Os01g72080
Os.12000.1.S1_at--49--1891Chr01:42146185..42146209 (25 bp)
ACGTTGCTGTGTGAATCGGACTTGT
LOC_Os01g72080
Os.12000.1.S1_at--551--3951Chr01:42146201..42146225 (25 bp)
CGGACTTGTATCTTGCTGCGATCGA
LOC_Os01g72080
Os.12000.1.S1_at--622--431Chr01:42146210..42146234 (25 bp)
ATCTTGCTGCGATCGAGCTACTATA
LOC_Os01g72080
Target Sequence 
GGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAG
ATCGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTT
TTTTGGCGCGCACTAGACGATGGAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGAT
GAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGT
TCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGT
ATCTTGCTGCGATCGAGCTACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis