Browse Element(s) Details


Os.52862.1.S1_at

Description gb:AK069640.1
DB_XREF= gi:32979664
TID=Os.52862.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027D18, full insert sequence.
FL= gb:AK069640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7204910/11Single-strand binding protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72049Os.54185.1.S1_at11/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72049Os.52862.1.S1_at10/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72070NANA1+42135362..42136420retrotransposon protein, putative, unclassified
LOC_Os01g72080Os.12000.1.S1_at11/111+42145130..42146259EF hand family protein, expressed
LOC_Os01g72090OsAffx.2460.1.S1_x_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090Os.15397.1.S1_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100Os.20355.1.S1_at11/111+42152913..42154005Polcalcin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52862.1.S1_at--1069--391NONE
ATCAGTGATACAACGACATAGGAGG
NONE
Os.52862.1.S1_at--378--6151Chr01:42108721..42108745 (25 bp)
GAGGTACTACTGTCCTGTCCAGGAA
LOC_Os01g72049
Os.52862.1.S1_at--443--5991Chr01:42108694..42108718 (25 bp)
GAGACTGGCCGGAAAGATGAAGATT
LOC_Os01g72049
Os.52862.1.S1_at--94--8971Chr01:42108659..42108683 (25 bp)
TGAAAGGATCCACTCATGAATTTTG
LOC_Os01g72049
Os.52862.1.S1_at--59--9771Chr01:42108625..42108649 (25 bp)
TAATCTCTTATGCATGTCTTATCTG
LOC_Os01g72049
Os.52862.1.S1_at--102--651Chr01:42108616..42108640 (25 bp)
ATGCATGTCTTATCTGCCTATCCCA
LOC_Os01g72049
Os.52862.1.S1_at--1033--531Chr01:42108597..42108621 (25 bp)
ATCCCATCCATACATACTACATCTA
LOC_Os01g72049
Os.52862.1.S1_at--50--2031Chr01:42108582..42108606 (25 bp)
ACTACATCTATATGCCTATTGGGAG
LOC_Os01g72049
Os.52862.1.S1_at--1113--7791Chr01:42108558..42108582 (25 bp)
GGTCGTTTGGACCTAAATCAATCGT
LOC_Os01g72049
Os.52862.1.S1_at--358--3031Chr01:42108539..42108563 (25 bp)
AATCGTTGGTTGCACTACTGAGGAA
LOC_Os01g72049
Os.52862.1.S1_at--971--3571Chr01:42108506..42108530 (25 bp)
CTAGGGCCATTACACGGGTCGATAA
LOC_Os01g72049
Target Sequence 
ATCAGTGATACAACGACATAGGAGGTACTACTGTCCTGTCCAGGAAAAGAGACTGGCCGGAAAGATGAAGATTGAGGAGT
TGATGAAAGGATCCACTCATGAATTTTGGAAATTTGATAATCTCTTATGCATGTCTTATCTGCCTATCCCATCCATACAT
ACTACATCTATATGCCTATTGGGAGGTCGTTTGGACCTAAATCAATCGTTGGTTGCACTACTGAGGAAGGGGATATCTAG
GGCCATTACACGGGTCGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis