Browse Element(s) Details

Os.20355.1.S1_at

Description

gb:AK070662.1
DB_XREF= gi:32980686
TID=Os.20355.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.20355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058D06, full insert sequence.
FL= gb:AK104094.1 gb:AK070662.1 gb:AK068769.1 gb:AK104159.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g72100	11/11	Polcalcin, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g72049	Os.54185.1.S1_at	11/11	1	+	42108502..42128836	Single-strand binding protein family protein, expressed
LOC_Os01g72049	Os.52862.1.S1_at	10/11	1	+	42108502..42128836	Single-strand binding protein family protein, expressed
LOC_Os01g72070	NA	NA	1	+	42135362..42136420	retrotransposon protein, putative, unclassified
LOC_Os01g72080	Os.12000.1.S1_at	11/11	1	+	42145130..42146259	EF hand family protein, expressed
LOC_Os01g72090	OsAffx.2460.1.S1_x_at	11/11	1	+	42149118..42151936	Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090	Os.15397.1.S1_at	11/11	1	+	42149118..42151936	Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100	Os.20355.1.S1_at	11/11	1	+	42152913..42154005	Polcalcin, putative, expressed
LOC_Os01g72110	NA	NA	1	+	42157883..42161287	Transposable element protein, putative, MuDR
LOC_Os01g72120	Os.24890.1.S1_at	4/11	1	+	42166847..42167909	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130	Os.24890.1.S2_at	10/11	1	+	42168609..42169398	glutathione S-transferase, putative, expressed
LOC_Os01g72140	Os.22957.1.S1_at	11/11	1	+	42170858..42172179	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150	OsAffx.24011.1.S1_at	11/11	1	+	42173266..42174214	glutathione S-transferase, putative, expressed
LOC_Os01g72160	Os.52054.1.S1_at	11/11	1	+	42174554..42175926	Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009408	biological_process	response to heat
GO:0009409	biological_process	response to cold
GO:0009612	biological_process	response to mechanical stimulus
GO:0009646	biological_process	response to absence of light
GO:0009733	biological_process	response to auxin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0010038	biological_process	response to metal ion
GO:0019722	biological_process	calcium-mediated signaling
GO:0042542	biological_process	response to hydrogen peroxide
GO:0048574	biological_process	long-day photoperiodism, flowering
GO:0005509	molecular_function	calcium ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20355.1.S1_at--552--1009	1	Chr01:42153358..42153382 (25 bp)	TAGGATCAATCAACCACCCAATTTC	LOC_Os01g72100
Os.20355.1.S1_at--322--655	1	Chr01:42153238..42153262 (25 bp)	GATTAAAAGACCACTAGCCCTAGAT	LOC_Os01g72100
Os.20355.1.S1_at--240--331	1	Chr01:42153227..42153251 (25 bp)	CACTAGCCCTAGATTCTTTCTACTA	LOC_Os01g72100
Os.20355.1.S1_at--514--983	1	Chr01:42153144..42153168 (25 bp)	TAAAAAGCAGCAATTCTATCCCCTG	LOC_Os01g72100
Os.20355.1.S1_at--222--1015	1	Chr01:42153128..42153152 (25 bp)	TATCCCCTGCTTTTGGTTCTAAGAC	LOC_Os01g72100
Os.20355.1.S1_at--587--789	1	Chr01:42153114..42153138 (25 bp)	GGTTCTAAGACACGCCAATGCTTTC	LOC_Os01g72100
Os.20355.1.S1_at--292--1035	1	Chr01:42153081..42153105 (25 bp)	TTTTCCCCACAAGATGTAAGCGTTT	LOC_Os01g72100
Os.20355.1.S1_at--1042--979	1	Chr01:42153065..42153089 (25 bp)	TAAGCGTTTGCGTGGAGTAAGAGTC	LOC_Os01g72100
Os.20355.1.S1_at--691--855	1	Chr01:42153039..42153063 (25 bp)	TGGATCTTGGATCTTGCATTCTTGT	LOC_Os01g72100
Os.20355.1.S1_at--156--495	1	Chr01:42153024..42153048 (25 bp)	GCATTCTTGTTTCGATTGTTCACCA	LOC_Os01g72100
Os.20355.1.S1_at--45--661	1	Chr01:42153011..42153035 (25 bp)	GATTGTTCACCATCTGGAATTCTGG	LOC_Os01g72100

Target Sequence

TAGGATCAATCAACCACCCAATTTCTTCCCTTCTCCTCATCCTCCTCATTGACCAACTCCTATCCATCCATCCATCCGAG
CGTGCCGTGTGCGGTGGAAATTTTAAGTGTATATACAACCGATTAAAAGACCACTAGCCCTAGATTCTTTCTACTAATAA
TTGCGATTCTCAACTACTACTAGTTTCTTTCTTGGTAGATTGGAAATTGGAGGCTAAAAAGCAGCAATTCTATCCCCTGC
TTTTGGTTCTAAGACACGCCAATGCTTTCTCTCTNTTTTTTTCCCCACAAGATGTAAGCGTTTGCGTGGAGTAAGAGTCT
NNNNNNNTGGATCTTGGATCTTGCATTCTTGTTTCGATTGTTCACCATCTGGAATTCTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis