Browse Element(s) Details


Os.11303.1.S1_s_at

Description gb:AK107822.1
DB_XREF= gi:32993031
TID=Os.11303.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G02, full insert sequence.
FL= gb:AK107822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7217011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72110NANA1+42157883..42161287Transposable element protein, putative, MuDR
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11303.1.S1_s_at--646--4911Chr01:42181216..42181240 (25 bp)
GCTTCTGGGCCCGATTCATCGACGA
LOC_Os01g72170
Os.11303.1.S1_s_at--42--7571Chr01:42181222..42181246 (25 bp)
GGGCCCGATTCATCGACGACAAGTG
LOC_Os01g72170
Os.11303.1.S1_s_at--697--5771Chr01:42181236..42181260 (25 bp)
GACGACAAGTGCACGAAGCCGTTCT
LOC_Os01g72170
Os.11303.1.S1_s_at--304--2231Chr01:42181240..42181264 (25 bp)
ACAAGTGCACGAAGCCGTTCTGGCT
LOC_Os01g72170
Os.11303.1.S1_s_at--431--1851Chr01:42181248..42181272 (25 bp)
ACGAAGCCGTTCTGGCTGGCGCTGT
LOC_Os01g72170
Os.11303.1.S1_s_at--569--5811Chr01:42181395..42181419 (25 bp)
GACCTGGCCGCCAGTGGGTACGCCT
LOC_Os01g72170
Os.11303.1.S1_s_at--1122--1811Chr01:42181414..42181438 (25 bp)
ACGCCTACTGGCTGGAGGTGCTAGA
LOC_Os01g72170
Os.11303.1.S1_s_at--809--1751Chr01:42181483..42181507 (25 bp)
ACCTCTGCCGCTGGGCGAAGGAGTA
LOC_Os01g72170
Os.11303.1.S1_s_at--108--9711Chr01:42181525..42181549 (25 bp)
TCAAGGCGTGCCTCCCGGACAGGGC
LOC_Os01g72170
Os.11303.1.S1_s_at--660--2691Chr01:42181551..42181575 (25 bp)
AAGCTGCTCGAACACTTCACGGCGA
LOC_Os01g72170
Os.11303.1.S1_s_at--540--2051Chr01:42181564..42181588 (25 bp)
ACTTCACGGCGATGAAGGAGATGTT
LOC_Os01g72170
Target Sequence 
GCTTCTGGGCCCGATTCATCGACGACAAGTGCACGAAGCCGTTCTGGCTGGCGCTGTGGTCGACGGACGACGGCGAGGTG
CGGGAGGGCTTCGCGGCGGAGATCAAGGAGAACCTGAAGCTCCTCGAGGCGCAGCTCAAGGGGAGGCGATTCTTCGGAGG
CGACGCCATCGGCTACCTCGACCTGGCCGCCAGTGGGTACGCCTACTGGCTGGAGGTGCTAGAGGAGGTCGCCGGGGTGA
GCCTGGTCACCGGCGACGAGTTCCCCGACCTCTGCCGCTGGGCGAAGGAGTACGCCGCCGACGACAGGATCAAGGCGTGC
CTCCCGGACAGGGCCAAGCTGCTCGAACACTTCACGGCGATGAAGGAGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11303.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis