Browse Element(s) Details


Os.6738.1.S1_at

Description gb:AK101605.1
DB_XREF= gi:32986814
TID=Os.6738.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.15 (P0007F06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051L23, full insert sequence.
FL= gb:AK101605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48220Os.6738.1.S1_at11/111+27957871..27960305expressed protein
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6738.1.S1_at--287--1471Chr01:27958431..27958455 (25 bp)
AGAATCCTTCTAACTGTGCTGCTAC
LOC_Os01g48220
Os.6738.1.S1_at--117--1651Chr01:27958379..27958403 (25 bp)
AGCGAGTGGTCCGATGGCATTTCAT
LOC_Os01g48220
Os.6738.1.S1_at--211--8291Chr01:27958364..27958388 (25 bp)
GGCATTTCATCATTTGGGACCACAA
LOC_Os01g48220
Os.6738.1.S1_at--755--2851Chr01:27958341..27958365 (25 bp)
AAGTCGTGCATAATCAGCCATTTGG
LOC_Os01g48220
Os.6738.1.S1_at--912--1371Chr01:27958266..27958290 (25 bp)
AGAGCGTAGCTCTCCCAGTGGTAAC
LOC_Os01g48220
Os.6738.1.S1_at--238--5051Chr01:27958228..27958252 (25 bp)
GCAGACTCTGTTGCCATGGCTGATA
LOC_Os01g48220
Os.6738.1.S1_at--867--1291Chr01:27958130..27958154 (25 bp)
AGATGTTTCACTGGTCTCACAAAGG
LOC_Os01g48220
Os.6738.1.S1_at--301--10431Chr01:27958077..27958101 (25 bp)
TTATCAGCTCTCCATAAGGCCACTT
LOC_Os01g48220
Os.6738.1.S1_at--4--6351Chr01:27957943..27957967 (25 bp)
GATGCTAGCATATGTCCTCACTTTT
LOC_Os01g48220
Os.6738.1.S1_at--299--8131Chr01:27957915..27957939 (25 bp)
GGACATACCTGCTTGTAACCTGGTA
LOC_Os01g48220
Os.6738.1.S1_at--879--7831Chr01:27957894..27957918 (25 bp)
GGTAAACTTATGTCTTTGCGGTATG
LOC_Os01g48220
Target Sequence 
AGAATCCTTCTAACTGTGCTGCTACTGTTGTTGCTGTTCTGCCTCAGCATCCAGCGAGTGGTCCGATGGCATTTCATCAT
TTGGGACCACAAGTCGTGCATAATCAGCCATTTGGAAATATGTTTGAAACAGCTAGTGTGGTAGGGTATCCACGGGATCG
AGTTGAGAGCGTAGCTCTCCCAGTGGTAACTGCAGCCCAACCTGCAGACTCTGTTGCCATGGCTGATAAGCTCAATGCAG
GTAGCAATGTTACATCCCCNACGAGAATGGTCAGGTTAGTGCAGAATGAACCAGTCATATTGAGATGTTTCACTGGTCTC
ACAAAGGATCTCCNACTTCTAATATGGACTGGAANCTTATCAGCTCTCCATAAGGCCACTTCAATCTGGCTTCCTTTTTT
TTTAATTAGCCAGCAGATTGGTGCAAATCCTTCTACTTTTTTTCAGCTGAAGGGTCAATCTGAATAAGAATGGTAGATTA
GTTAAGTGATGATGCTAGCATATGTCCTCACTTTTAATGGACATACCTGCTTGTAACCTGGTAAACTTATGTCTTTGCGG
TATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis