Browse Element(s) Details


Os.6749.1.S1_at

Description gb:AK071413.1
DB_XREF= gi:32981436
TID=Os.6749.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092I05, full insert sequence.
FL= gb:AK104905.1 gb:AK071413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g101209/11COP9 signalosome complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10110Os.6372.1.S1_at11/113+5095360..5098165Cupin family protein, expressed
LOC_Os03g10120Os.6749.1.S1_at9/113+5098396..5103730COP9 signalosome complex subunit 4, putative, expressed
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6749.1.S1_at--761--5991NONE
GAGACCGCATCAAAAAGCTCTGTTA
NONE
Os.6749.1.S1_at--1054--6771Chr03:5099808..5099832 (25 bp)
GTTACCAGATAAGTCTACTGTGCTT
LOC_Os03g10120
Os.6749.1.S1_at--155--9931Chr03:5099793..5099817 (25 bp)
TACTGTGCTTGACCGGGCAATGATT
LOC_Os03g10120
Os.6749.1.S1_at--1036--1531Chr03:5099767..5099791 (25 bp)
AGCATAACCTCCTTAGTGCCAGTAA
LOC_Os03g10120
Os.6749.1.S1_at--891--7571Chr03:5099630..5099649 (20 bp)
GGGCATTGACCCTAGGAAGGCTGAA
LOC_Os03g10120
Os.6749.1.S1_at--807--1071NONE
AGTGGGACCAACAGATTGCGGGACT
NONE
Os.6749.1.S1_at--972--10691Chr03:5098699..5098723 (25 bp)
TTGCGGGACTGTGCCAAGCGCTGAA
LOC_Os03g10120
Os.6749.1.S1_at--678--3231Chr03:5098685..5098709 (25 bp)
CAAGCGCTGAACGACATTCTGGACA
LOC_Os03g10120
Os.6749.1.S1_at--1046--8291Chr03:5098641..5098665 (25 bp)
GGCTATTCCTGTGTGAGCTCTTCAA
LOC_Os03g10120
Os.6749.1.S1_at--370--7471Chr03:5098631..5098655 (25 bp)
GTGTGAGCTCTTCAAGTTGCTTCGA
LOC_Os03g10120
Os.6749.1.S1_at--397--3471Chr03:5098448..5098472 (25 bp)
CAGTGGCGCCGTAATGGCATTATAT
LOC_Os03g10120
Target Sequence 
GAGACCGCATCAAAAAGCTCTGTTACCAGATAAGTCTACTGTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTG
CCAGTAAACTTTACACTAATATCAGCTTTGATGAGCTTGGAGCATTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATA
GCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACAC
TGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACATTCTGGACAGCATGTCAAGCA
AGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTC
ACGGACATTTTGTACAGATGTTCGCAGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGNCACAATTAGTCGGTGA
TCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis