Browse Element(s) Details

Description

gb:AU161491
DB_XREF= gi:10931217
DB_XREF=AU161491
CLONE=S16551
TID=Os.6763.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6763 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41410	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41370	NA	NA	6	+	24795550..24798356	hypothetical protein
LOC_Os06g41380	Os.57073.1.S1_at	11/11	6	+	24804549..24807592	expressed protein
LOC_Os06g41390	Os.5942.1.S1_at	11/11	6	+	24807830..24816725	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390	Os.49688.1.S1_at	9/11	6	+	24807830..24816725	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410	Os.35458.1.S1_at	11/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.15876.1.A1_at	9/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.36709.1.S1_x_at	3/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.8753.4.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.6763.1.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.5273.1.S1_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41440	Os.5275.1.S1_at	10/11	6	+	24830707..24838945	legume lectins beta domain PF\|00139 containing protein, putative, expressed
LOC_Os06g41450	Os.27788.1.S1_at	11/11	6	+	24842687..24843763	VQ motif family protein, expressed
LOC_Os06g41460	Os.10827.1.S1_x_at	11/11	6	+	24849445..24852357	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460	Os.46055.2.S1_x_at	6/11	6	+	24849445..24852357	transposon protein, putative, CACTA, En/Spm sub-class

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6763.1.S1_x_at--22--47	1	Chr01:28256939..28256962 (24 bp)	ATCTGAATCTTTTCCTACTTTCTTG	NONE
Os.6763.1.S1_x_at--669--1037	1	Chr01:28256930..28256954 (25 bp)	TTTTCCTACTTTCTTGCGTCGTGTA	NONE
Os.6763.1.S1_x_at--648--1067	1	Chr01:28256928..28256952 (25 bp)	TTCCTACTTTCTTGCGTCGTGTATG	NONE
Os.6763.1.S1_x_at--630--373	1	Chr01:28256925..28256949 (25 bp)	CTACTTTCTTGCGTCGTGTATGCTG	NONE
Os.6763.1.S1_x_at--307--205	1	Chr01:28256923..28256947 (25 bp)	ACTTTCTTGCGTCGTGTATGCTGGG	NONE
Os.6763.1.S1_x_at--447--1031	1	Chr01:28256921..28256945 (25 bp)	TTTCTTGCGTCGTGTATGCTGGGCA	NONE
Os.6763.1.S1_x_at--573--345	1	Chr01:28256898..28256922 (25 bp)	CAGTCGTGGTGGAAATGCAATTGTG	NONE
Os.6763.1.S1_x_at--489--537	2	Chr06:24819449..24819472 (24 bp)	GAAGACTGTGCCTTTGCAAGAAACA	LOC_Os06g41410
Os.6763.1.S1_x_at--754--337	1	Chr01:28256851..28256875 (25 bp)	CACCAAGGCCATCCTATTCAGATTT	NONE
Os.6763.1.S1_x_at--1021--17	1	Chr01:28256830..28256854 (25 bp)	ATTTCAGTGGTTAAGATTGAGATCC	NONE
Os.6763.1.S1_x_at--48--751	1	Chr01:28256824..28256848 (25 bp)	GTGGTTAAGATTGAGATCCTGTCTT	NONE

Target Sequence

ATCTGAATCTTTTCCTACTTTCTTGCGTCGTGTATGCTGGGCAGTCGTGGTGGAAATGCAATTGTGAAGACTGTGCCTTT
GCAAGAAACACCAAGGCCATCCTATTCAGATTTCAGTGGTTAAGATTGAGATCCTGTCTT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: