Browse Element(s) Details


Os.6771.1.S1_s_at

Description gb:AK072550.1
DB_XREF= gi:32982573
TID=Os.6771.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.6771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131C18, full insert sequence.
FL= gb:AK072550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08160OsAffx.16892.1.S1_at11/118+4638954..4642364hypothetical protein
LOC_Os08g08170Os.26818.2.S1_at1/118+4642555..4646046transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180OsAffx.10637.3.S1_s_at11/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180OsAffx.10637.1.S1_s_at11/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180OsAffx.10637.4.S1_s_at11/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180Os.33878.1.S1_at6/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180Os.27102.1.S1_x_at1/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08190Os.6771.1.S1_s_at11/118+4666057..4669028expressed protein
LOC_Os08g08190Os.54967.1.S1_at1/118+4666057..4669028expressed protein
LOC_Os08g08200Os.21877.1.S1_at11/118+4669948..4674157mRNA capping enzyme, large subunit family protein, expressed
LOC_Os08g08210Os.18478.1.S1_at10/118+4684772..4690386SET domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6771.1.S1_s_at--847--10791Chr08:4667824..4667848 (25 bp)
TTGTTGAAATCAAGCCCAGAGGCAC
LOC_Os08g08190
Os.6771.1.S1_s_at--472--6671Chr08:4668305..4668329 (25 bp)
GTTGCATCTCTTGCCTCTGATAAAA
LOC_Os08g08190
Os.6771.1.S1_s_at--80--8211Chr08:4668367..4668391 (25 bp)
GGAATTTTACAAGACGCACCAGCAA
LOC_Os08g08190
Os.6771.1.S1_s_at--371--8571Chr08:4668521..4668545 (25 bp)
TGGTTTATACTTTCCCTGAGGGCAC
LOC_Os08g08190
Os.6771.1.S1_s_at--829--1971Chr08:4668544..4668568 (25 bp)
ACTGCCTCGGTAGTTTCACCTGAGA
LOC_Os08g08190
Os.6771.1.S1_s_at--132--5051Chr08:4668574..4668598 (25 bp)
GCAGACGCCTCCTCAGAGAATTCAT
LOC_Os08g08190
Os.6771.1.S1_s_at--288--4211Chr08:4668623..4668647 (25 bp)
CCCCTTTTGCAGACTTCATGGATAA
LOC_Os08g08190
Os.6771.1.S1_s_at--1019--6671Chr08:4668705..4668729 (25 bp)
GTTCCGCAAACCCAATGAAGCCGAG
LOC_Os08g08190
Os.6771.1.S1_s_at--1036--5411Chr08:4668721..4668745 (25 bp)
GAAGCCGAGATTCTTGGTGGATCAT
LOC_Os08g08190
Os.6771.1.S1_s_at--733--7731Chr08:4668736..4668760 (25 bp)
GGTGGATCATTCATGGCTCTGGCCA
LOC_Os08g08190
Os.6771.1.S1_s_at--534--3911Chr08:4668754..4668778 (25 bp)
CTGGCCATAGCAGTCATCCTGTTAA
LOC_Os08g08190
Target Sequence 
TTGTTGAAATCAAGCCCAGAGGCACAGGGTGTTGTTGCATCTCTTGCCTCTGATAAAAATGTCTGGGACGCAGTGTTGAA
AAATGAGAAGGTCATGGAATTTTACAAGACGCACCAGCAAAGTCTGGTTTATACTTTCCCTGAGGGCACTGCCTCGGTAG
TTTCACCTGAGAAGCTTGCAGACGCCTCCTCAGAGAATTCATCCTCCGGGGAGAAGCCTGAGAGCTCCCCTTTTGCAGAC
TTCATGGATAATGCAAGGAAGACGGTGATCGACATTGTGAACAATATAACCAACTTTTTCCAAGATATGTTCCGCAAACC
CAATGAAGCCGAGATTCTTGGTGGATCATTCATGGCTCTGGCCATAGCAGTCATCCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6771.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis