Browse Element(s) Details


Os.6790.1.S1_at

Description gb:AK066754.1
DB_XREF= gi:32976772
TID=Os.6790.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074G14, full insert sequence.
FL= gb:AK066754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4081810/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40790OsAffx.28028.1.S1_x_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40790OsAffx.28028.1.S1_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40800OsAffx.15865.1.S1_at11/116+24340756..24341322hypothetical protein
LOC_Os06g40809Os.51592.1.S1_at11/116+24342914..24343459expressed protein
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6790.1.S1_at--51--4091NONE
CGACTTCACCGGGATGAGCCAGGCG
NONE
Os.6790.1.S1_at--826--411Chr06:24352632..24352656 (25 bp)
ATCATGTACACGGTGAGCGCGTCGC
LOC_Os06g40818
Os.6790.1.S1_at--365--511Chr06:24352704..24352728 (25 bp)
ATCGTCGGGAACACGCAGCTCAAGA
LOC_Os06g40818
Os.6790.1.S1_at--59--2391Chr06:24352818..24352842 (25 bp)
AAACGTACACGTCAGCACGCAGAAT
LOC_Os06g40818
Os.6790.1.S1_at--571--1891Chr06:24352826..24352850 (25 bp)
ACGTCAGCACGCAGAATGAATTAAC
LOC_Os06g40818
Os.6790.1.S1_at--1152--651Chr06:24352841..24352865 (25 bp)
ATGAATTAACTGTCTGCACTCTGCA
LOC_Os06g40818
Os.6790.1.S1_at--1156--9471Chr06:24352853..24352877 (25 bp)
TCTGCACTCTGCAGTGTAATGCTGC
LOC_Os06g40818
Os.6790.1.S1_at--280--7071Chr06:24352868..24352892 (25 bp)
GTAATGCTGCAATCCACCAGGTGGT
LOC_Os06g40818
Os.6790.1.S1_at--569--3031Chr06:24352878..24352902 (25 bp)
AATCCACCAGGTGGTCAGCGACTGG
LOC_Os06g40818
Os.6790.1.S1_at--549--7811Chr06:24352890..24352914 (25 bp)
GGTCAGCGACTGGTTTTATTACCAT
LOC_Os06g40818
Os.6790.1.S1_at--933--4831Chr06:24352952..24352976 (25 bp)
GCTAATATTATTTTCTCTTCTTACA
LOC_Os06g40818
Target Sequence 
CGACTTCACCGGGATGAGCCAGGCGGCGATCCCGACGGTGTCGCTGCTGTTCCAGGGCGGCGCGGCGCTGGACGTCGACG
CGTCGGGGATCATGTACACGGTGAGCGCGTCGCAGGTGTGCCTCGCGTTCGCCGGCAACGAGGACGGCGGCGACGTCGGC
ATCGTCGGGAACACGCAGCTCAAGACGTTCGGCGTCNGCCTACGACNATCGGGAAGAAGGTGGTCGGCTTCTCCCCCGGA
GCTTGCTGATGAAATNGTGCCACGCGTCACCCCCAGCAAACGTACACGTCAGCACGCAGAATGAATTAACTGTCTGCACT
CTGCAGTGTAATGCTGCAATCCACCAGGTGGTCAGCGACTGGTTTTATTACCATGATTTCTGAAGATATATAATCATATG
ATTACAAATATGCTAATATTATTTTCTCTTCTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis