Browse Element(s) Details


Os.6805.1.A1_at

Description gb:AY282740.1
DB_XREF= gi:30908920
TID=Os.6805.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6805 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc finger transcription factor ZFP33 mRNA, complete cds.
PROD=putative zinc finger transcription factor ZFP33
FL= gb:AY282740.1 gb:AK121813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0735011/11Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed
LOC_Os07g07320Os.13016.1.S1_a_at11/117+3660674..3661707Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os07g07329NANA7+3662263..3662611NA
LOC_Os07g07340Os.52598.1.S1_at11/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07340OsAffx.25749.1.S1_s_at2/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6805.1.A1_at--388--7131Chr07:3674791..3674815 (25 bp)
GTCTTCGAAGACACCATTGGAGCCA
LOC_Os07g07350
Os.6805.1.A1_at--1010--1411Chr07:3674669..3674693 (25 bp)
AGAAGGTTGGTCTGACTGGCTTCCA
LOC_Os07g07350
Os.6805.1.A1_at--498--6351Chr07:3674639..3674663 (25 bp)
GATGCGGAGGTACCTTCTGCTCAAC
LOC_Os07g07350
Os.6805.1.A1_at--1135--6771Chr07:3674609..3674633 (25 bp)
GTTATACCGAAGCTCACGACTGCAC
LOC_Os07g07350
Os.6805.1.A1_at--562--871Chr07:3674570..3674594 (25 bp)
AGGCCGGCCGGGATCAGATTGCCAA
LOC_Os07g07350
Os.6805.1.A1_at--85--1531Chr07:3674546..3674570 (25 bp)
AGCAGAATCCTGTTGTGATAGCCGA
LOC_Os07g07350
Os.6805.1.A1_at--996--9751Chr07:3674479..3674503 (25 bp)
TAATCTCTATTCATGGTGGCAACCG
LOC_Os07g07350
Os.6805.1.A1_at--415--6831Chr07:3674445..3674469 (25 bp)
GTTTACTTCAGCCAGTAGGTTCCTT
LOC_Os07g07350
Os.6805.1.A1_at--47--10091Chr07:3674430..3674454 (25 bp)
TAGGTTCCTTCAGGTCTGGGTTAGT
LOC_Os07g07350
Os.6805.1.A1_at--68--8031Chr07:3674399..3674423 (25 bp)
GGAGTCCCAATTGTGTCTATCCTTC
LOC_Os07g07350
Os.6805.1.A1_at--1061--811Chr07:3674365..3674389 (25 bp)
ATGGTTTCATTCTCTGGCAATTAAG
LOC_Os07g07350
Target Sequence 
GTCTTCGAAGACACCATTGGAGCCAGCAAAGCCAGATGAAGTTCCTGCNGCAGCTGTAGAGGATAAGCAAGCGGCACAGG
AGCCTCCAAAGCCACCCAGCAACCGATGCCTGTCATGCCGTAAGAAGGTTGGTCTGACTGGCTTCCAGTGCCGATGCGGA
GGTACCTTCTGCTCAACACACCGTTATACCGAAGCTCACGACTGCACCTTCGACTACAAGAAGGCCGGCCGGGATCAGAT
TGCCAAGCAGAATCCTGTTGTGATAGCCGAGAAGATCAACAAGATCTGATTGAAGGTTATGGAAGGGCCATTTAATCTCT
ATTCATGGTGGCAACCGAGTCTTCAAGTTTACTTCAGCCAGTAGGTTCCTTCAGGTCTGGGTTAGTGTGCTAGGAGTCCC
AATTGTGTCTATCCTTCCTCCTTATCATGGTTTCATTCTCTGGCAATTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6805.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis