Browse Element(s) Details


Os.6813.1.S1_at

Description gb:AK064099.1
DB_XREF= gi:32974117
TID=Os.6813.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H10, full insert sequence.
FL= gb:AK064099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0163011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01600Os.25526.1.S1_at11/119+421295..426050expressed protein
LOC_Os09g01600Os.40235.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01600Os.27457.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed
LOC_Os09g01630Os.6813.1.S1_at11/119+443803..450698transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g01640Os.6161.1.S1_at11/119+455264..456840Zinc knuckle family protein, expressed
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g01660NANA9+473421..474010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6813.1.S1_at--83--5591Chr09:444126..444150 (25 bp)
GAAATGCACCAGATCCAAATGACCC
LOC_Os09g01630
Os.6813.1.S1_at--1101--1411Chr09:444092..444116 (25 bp)
AGAAATGAACAAGCTCCGAGCCTCT
LOC_Os09g01630
Os.6813.1.S1_at--603--4071Chr09:444076..444100 (25 bp)
CGAGCCTCTCTAGGGTTGAAACCAC
LOC_Os09g01630
Os.6813.1.S1_at--854--7051Chr09:444044..444068 (25 bp)
GTAACCTTGATGTAATGCACCTGAT
LOC_Os09g01630
Os.6813.1.S1_at--489--3011Chr09:444031..444055 (25 bp)
AATGCACCTGATGTTTGAGCGCCTT
LOC_Os09g01630
Os.6813.1.S1_at--177--10771Chr09:444017..444041 (25 bp)
TTGAGCGCCTTTAGCTTTAGCTTGA
LOC_Os09g01630
Os.6813.1.S1_at--614--2711Chr09:443969..443993 (25 bp)
AAGCAGTACCGCCTGTCAAAGAGTA
LOC_Os09g01630
Os.6813.1.S1_at--511--9811Chr09:443901..443925 (25 bp)
TAACGGTATGTGTCTGCATCTCCCC
LOC_Os09g01630
Os.6813.1.S1_at--103--10851Chr09:443866..443890 (25 bp)
TTGGAGCGCAAGTCATGTTCTTAGC
LOC_Os09g01630
Os.6813.1.S1_at--864--6731Chr09:443850..443874 (25 bp)
GTTCTTAGCGATGCTCTATGCTTGA
LOC_Os09g01630
Os.6813.1.S1_at--1037--291Chr09:443817..443842 (25 bp)
ATACCTTCGAGTGTGACGGCTTTAA
LOC_Os09g01630
Target Sequence 
GAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTCCGAGCCTCTCTAGGGTTGAAACCACTGAAG
TAGTAACCTTGATGTAATGCACCTGATGTTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGATTTTTCTGACGACTTAAG
CAGTACCGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTNCCATATTATTACTTCGCTGTAACGGTATGTGTCT
GCATCTCCCCACATTTTTTTTTGGAGCGCAAGTCATGTTCTTAGCGATGCTCTATGCTTGATTTGATTATACCTTCGAGT
GTGACGGCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis