Browse Element(s) Details


Os.6825.1.S1_at

Description gb:AK107735.1
DB_XREF= gi:32992944
TID=Os.6825.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-G02, full insert sequence.
FL= gb:AK100260.1 gb:AK107735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4896011/11avirulence-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48950Os.22271.2.S1_x_at10/116+29656481..29664197Auxin response factor family protein
LOC_Os06g48960Os.6825.1.S1_at11/116+29664348..29666374avirulence-responsive protein, putative, expressed
LOC_Os06g48970Os.8912.1.S1_at11/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48970Os.50339.1.S1_at1/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48980Os.53495.1.S1_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48980Os.53495.1.S1_x_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6825.1.S1_at--664--5111Chr06:29665761..29665785 (25 bp)
GCAATCCTACCTGTTCAAAGCAAGA
LOC_Os06g48960
Os.6825.1.S1_at--1140--5171Chr06:29665255..29665276 (22 bp)
GCAAGGTCATCACCGGTGTTACTGA
LOC_Os06g48960
Os.6825.1.S1_at--288--7431Chr06:29665240..29665264 (25 bp)
GTGTTACTGATGCAGAGCTCCAGAT
LOC_Os06g48960
Os.6825.1.S1_at--153--5991Chr06:29664943..29664967 (25 bp)
GAGACAATGCTTGCTGACACCTATG
LOC_Os06g48960
Os.6825.1.S1_at--966--5631Chr06:29664928..29664952 (25 bp)
GACACCTATGTATGGGCTGATGCAG
LOC_Os06g48960
Os.6825.1.S1_at--496--831Chr06:29664615..29664639 (25 bp)
ATGGATGGCCTCGAACAGCCTGAAT
LOC_Os06g48960
Os.6825.1.S1_at--774--5551Chr06:29664576..29664600 (25 bp)
GAAACCTACCAATCATTCATGCAGG
LOC_Os06g48960
Os.6825.1.S1_at--622--2271Chr06:29664551..29664575 (25 bp)
AAATCCAACAGCCTGGGACGACGAC
LOC_Os06g48960
Os.6825.1.S1_at--968--2871Chr06:29664502..29664526 (25 bp)
AAGGACTACATTGCAATATTCGCCA
LOC_Os06g48960
Os.6825.1.S1_at--862--851Chr06:29664456..29664480 (25 bp)
ATGGCAGTTCGCTGTATTAGCATGT
LOC_Os06g48960
Os.6825.1.S1_at--606--8951Chr06:29664426..29664450 (25 bp)
TGAAATAACCCATCTCCTCGAGAGT
LOC_Os06g48960
Target Sequence 
GCAATCCTACCTGTTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGA
TGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACA
CCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAA
GATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATC
ATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATT
CGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis