Browse Element(s) Details


Os.6838.1.S1_at

Description gb:AK062911.1
DB_XREF= gi:32972929
TID=Os.6838.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full insert sequence.
FL= gb:AK062911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4051011/11Cortical cell delineating protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed
LOC_Os10g40510Os.6838.1.S1_at11/1110+21360623..21361403Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40520Os.22427.1.S1_at11/1110+21364191..21364817Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40530Os.36913.1.S1_at11/1110+21367364..21368093Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40540Os.2885.1.S1_at11/1110+21371036..21375114Enoyl-CoA hydratase, putative, expressed
LOC_Os10g40550Os.2884.1.S1_at10/1110+21377297..21381288trehalose-6-phosphate phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6838.1.S1_at--356--9091Chr10:21361105..21361129 (25 bp)
TGCTCGGCCTCGTGAAGGCCAAGAT
LOC_Os10g40510
Os.6838.1.S1_at--766--551Chr10:21360912..21360936 (25 bp)
ATCCGACTACCAGTGTGCTTAATCA
LOC_Os10g40510
Os.6838.1.S1_at--203--391Chr10:21360891..21360915 (25 bp)
ATCACATTGGGACACTGCAGCCGAT
LOC_Os10g40510
Os.6838.1.S1_at--986--6391Chr10:21360857..21360881 (25 bp)
GATCGATTGACAGTGTGCTACACGT
LOC_Os10g40510
Os.6838.1.S1_at--653--4831Chr10:21360841..21360865 (25 bp)
GCTACACGTCGTCTACATGTTTTTG
LOC_Os10g40510
Os.6838.1.S1_at--133--6631Chr10:21360817..21360841 (25 bp)
GTTGGTTGGTTTACTGTGAGCAGTC
LOC_Os10g40510
Os.6838.1.S1_at--605--3851Chr10:21360793..21360817 (25 bp)
CTGAACTCTCTGAACTTTGGAAACT
LOC_Os10g40510
Os.6838.1.S1_at--202--3691Chr10:21360779..21360803 (25 bp)
CTTTGGAAACTGTCTGTTTTGTCTT
LOC_Os10g40510
Os.6838.1.S1_at--45--771Chr10:21360691..21360715 (25 bp)
ATGTGTAAGTGTTGGTTGTGACCCC
LOC_Os10g40510
Os.6838.1.S1_at--276--8931Chr10:21360673..21360697 (25 bp)
TGACCCCGGGTGATCAGTTTACTGG
LOC_Os10g40510
Os.6838.1.S1_at--173--10831Chr10:21360630..21360654 (25 bp)
TTGTGCTTATGATCTGTTATGGTTC
LOC_Os10g40510
Target Sequence 
TGCTCGGCCTCGTGAAGGCCAAGATCGGCGCGGTGGCGCCGTACGAGCCCTGCTGCTCGCTGCTCGACGGCCTCGTCGAC
CTCGACGCCGCCGTCTGCCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCCTCAACCTCAACATCCCCATCGACCTCAG
CCTCATCCTCAACAACTGCGGCAAGATCTGCCCATCCGACTACCAGTGTGCTTAATCACATTGGGACACTGCAGCCGATC
GATCGATCGATCGATTGACAGTGTGCTACACGTCGTCTACATGTTTTTGTTGGTTGGTTTACTGTGAGCAGTCTGAACTC
TCTGAACTTTGGAAACTGTCTGTTTTGTCTTTGTTTATGCTTGCAAAGTTTAATTAGTTCTGGGAAAAAACCATTGGCCA
GTATGTATTATTACATGTGTAAGTGTTGGTTGTGACCCCGGGTGATCAGTTTACTGGTCAATATATATGTATTTTTTGTG
CTTATGATCTGTTATGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis