Browse Element(s) Details


Os.6853.1.S1_at

Description gb:AK059092.1
DB_XREF= gi:32969110
TID=Os.6853.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.6853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C01, full insert sequence.
FL= gb:AK059092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1062011/11KOW domain-containing transcription factor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10600OsAffx.27556.2.S1_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600Os.57416.1.S1_x_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600OsAffx.27556.1.S1_s_at1/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10610NANA6+5521554..5522177hypothetical protein
LOC_Os06g10620Os.6853.1.S1_at11/116+5522782..5527577KOW domain-containing transcription factor family protein, putative, expressed
LOC_Os06g10629NANA6+5533562..5534029NA
LOC_Os06g10640Os.50619.1.S1_x_at1/116+5539757..5540670hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0003700molecular_functiontranscription factor activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6853.1.S1_at--656--10671Chr06:5523564..5523588 (25 bp)
TTCCACTCCTGTAGGTCAACCAATG
LOC_Os06g10620
Os.6853.1.S1_at--200--3011Chr06:5523543..5523567 (25 bp)
AATGACACCGAATTCTGCCTCGTAC
LOC_Os06g10620
Os.6853.1.S1_at--165--9711Chr06:5523498..5523522 (25 bp)
TCAACCGATGACTCCAGGCAATGTT
LOC_Os06g10620
Os.6853.1.S1_at--646--2811Chr06:5523156..5523269 (25 bp)
AAGTTCTTGCGGATGGATCTTGTCG
LOC_Os06g10620
Os.6853.1.S1_at--925--7231Chr06:5523130..5523154 (25 bp)
GTCGCCCTTGGGTCATCAGGTAATG
LOC_Os06g10620
Os.6853.1.S1_at--64--7371Chr06:5523105..5523129 (25 bp)
GTGAGATCGTGACGGTTCTTCCAAC
LOC_Os06g10620
Os.6853.1.S1_at--1094--5891Chr06:5523079..5523103 (25 bp)
GAGCTCGAGGTTATTCGGCCAAAGA
LOC_Os06g10620
Os.6853.1.S1_at--309--4251Chr06:5523020..5523044 (25 bp)
CCGTGGATACTCTGGAAAGCTCATA
LOC_Os06g10620
Os.6853.1.S1_at--851--1011Chr06:5522996..5523020 (25 bp)
AGGTATAGATGGTTCCGACGGCATT
LOC_Os06g10620
Os.6853.1.S1_at--425--6111Chr06:5522882..5522906 (25 bp)
GAGTCCATCGTATAGCCAAATGTTT
LOC_Os06g10620
Os.6853.1.S1_at--595--7051Chr06:5522857..5522881 (25 bp)
GTAACAGATACCCTTTGTAGTCAAT
LOC_Os06g10620
Target Sequence 
TTCCACTCCTGTAGGTCAACCAATGACACCGAATTCTGCCTCGTACCTTCCTGGTACACCTGGTGGTCAACCGATGACTC
CAGGCAATGTTGGAATGGACATAATGTCGCCTATAATAGGTGGTGAAGGTGAAGGTAACTGGCTGTTGCCAGATGTTTTG
GTTAATGTGTTGAGGGCAGGCGATGATGGTCCTGGTGTGGTGAGGGAAGTTCTTGCGGATGGATCTTGTCGCGTCGCCCT
TGGGTCATCAGGTAATGGTGAGATCGTGACGGTTCTTCCAACCGAGCTCGAGGTTATTCGGCCAAAGAAGAGCGACAAGA
TCAAGATAATGAACGGCAATTTCCGTGGATACTCTGGAAAGCTCATAGGTATAGATGGTTCCGACGGCATTGTGAAGCTT
GATGACACATACGAAGTCAAGATCTTAGATATGGTGATTTTGGCCAAACTGGCGAGTTGAGATGGATGTATATTTTGTAC
GAGTCCATCGTATAGCCAAATGTTTGTAACAGATACCCTTTGTAGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis