Browse Element(s) Details


OsAffx.27556.2.S1_at

Description tigr:9634.m01035
TID=OsAffx.27556.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=homeobox protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1060011/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10590OsAffx.15355.1.S1_at10/116+5496370..5497772hypothetical protein
LOC_Os06g10600OsAffx.27556.2.S1_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600Os.57416.1.S1_x_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600OsAffx.27556.1.S1_s_at1/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10610NANA6+5521554..5522177hypothetical protein
LOC_Os06g10620Os.6853.1.S1_at11/116+5522782..5527577KOW domain-containing transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27556.2.S1_at--947--1831Chr06:5499186..5499210 (25 bp)
ACGCTGTCGGGCTCCAACGAGGTGA
LOC_Os06g10600
OsAffx.27556.2.S1_at--530--9191Chr06:5499174..5499198 (25 bp)
TCCAACGAGGTGAGCGTCCGCGTCA
LOC_Os06g10600
OsAffx.27556.2.S1_at--503--4651Chr06:5499155..5499179 (25 bp)
GCGTCACCATGCACCGGAGCACGGA
LOC_Os06g10600
OsAffx.27556.2.S1_at--536--5971Chr06:5498759..5499063 (25 bp)
GAGAACACCCGCTCCCAGGGCTTGA
LOC_Os06g10600
OsAffx.27556.2.S1_at--446--3471Chr06:5498744..5498768 (25 bp)
CAGGGCTTGAATGCGAGCCAGAACA
LOC_Os06g10600
OsAffx.27556.2.S1_at--542--5271Chr06:5498736..5498760 (25 bp)
GAATGCGAGCCAGAACAGCATGCTG
LOC_Os06g10600
OsAffx.27556.2.S1_at--568--7491Chr06:5498672..5498696 (25 bp)
GTGGTGTACTCGCCGATCGACATCC
LOC_Os06g10600
OsAffx.27556.2.S1_at--969--531Chr06:5498651..5498675 (25 bp)
ATCCCGGCGGCGAACGTCGTGATGA
LOC_Os06g10600
OsAffx.27556.2.S1_at--1--6311Chr06:5498631..5498655 (25 bp)
GATGAGCGGTGAGGACCCGTCGAGC
LOC_Os06g10600
OsAffx.27556.2.S1_at--54--9191Chr06:5498434..5498458 (25 bp)
TGCCGTCGTCGAAGCTCAACGCCGA
LOC_Os06g10600
OsAffx.27556.2.S1_at--1162--7231Chr06:5498405..5498429 (25 bp)
GTCGCCACCGTCAACGGGCTGATCA
LOC_Os06g10600
Target Sequence 
ACGCTGTCGGGCTCCAACGAGGTGAGCGTCCGCGTCACCATGCACCGGAGCACGGACCCCGGCCAGCCCAACGGCGTCGT
CCTCAGCGCCGCCACCTCCATCTGGCTCCCCGTCCCCTGCGACCACGTCTTCGCCTTCGTCCGCGACGAGAACACCCGCT
CCCAGGGCTTGAATGCGAGCCAGAACAGCATGCTGATACTGCAGGAGAGCTGCACGGACGCGTCGGGGTCGCTGGTGGTG
TACTCGCCGATCGACATCCCGGCGGCGAACGTCGTGATGAGCGGTGAGGACCCGTCGAGCATCCCGCTGCTGCCGTCGGG
GTTCACCATCCTCCCCGATGGCCGCCCGGGCTCGGCGGCGGGGGCGTCGACCAGCAGCGCGGGGCCGCTCGCCGCCGCGC
GCGGCGGGGGCGGCGGGGGCGCTGGCGGCGGGTCCGTCGTCACCGTCGCGTTCCAGATCCTCGTCAGCAGCCTGCCGTCG
TCGAAGCTCAACGCCGAGTCTGTCGCCACCGTCAACGGGCTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27556.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis