Browse Element(s) Details


OsAffx.15355.1.S1_at

Description tigr:9634.m01034
TID=OsAffx.15355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1059010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10590OsAffx.15355.1.S1_at10/116+5496370..5497772hypothetical protein
LOC_Os06g10600OsAffx.27556.2.S1_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600Os.57416.1.S1_x_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600OsAffx.27556.1.S1_s_at1/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10610NANA6+5521554..5522177hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15355.1.S1_at--889--10451Chr06:5496711..5496735 (25 bp)
TTAGCATTAGCTATAGCAAGAGACA
LOC_Os06g10590
OsAffx.15355.1.S1_at--586--3471Chr06:5496740..5496764 (25 bp)
CAGGGAGATGTTGCAGAGATACACT
LOC_Os06g10590
OsAffx.15355.1.S1_at--413--9051Chr06:5496751..5496775 (25 bp)
TGCAGAGATACACTAGCTACAAGCT
LOC_Os06g10590
OsAffx.15355.1.S1_at--1050--4831NONE
GCTACAAGCTAGCTAGGCTTTACAT
NONE
OsAffx.15355.1.S1_at--1100--9991Chr06:5497641..5497660 (20 bp)
TAGCTAGGCTTTACATTAATGGACA
LOC_Os06g10590
OsAffx.15355.1.S1_at--732--5591Chr06:5497657..5497681 (25 bp)
GACAGAAGTCAATACCCGAACCATT
LOC_Os06g10590
OsAffx.15355.1.S1_at--1074--1151Chr06:5497663..5497687 (25 bp)
AGTCAATACCCGAACCATTCATCCT
LOC_Os06g10590
OsAffx.15355.1.S1_at--1002--2631Chr06:5497675..5497699 (25 bp)
AACCATTCATCCTCTGCTGCTACAA
LOC_Os06g10590
OsAffx.15355.1.S1_at--112--2491Chr06:5497698..5497722 (25 bp)
AACACCAGCGACAACGCGCGAGGTG
LOC_Os06g10590
OsAffx.15355.1.S1_at--2--2611Chr06:5497710..5497734 (25 bp)
AACGCGCGAGGTGACAAGGATGCAT
LOC_Os06g10590
OsAffx.15355.1.S1_at--1085--4051Chr06:5497716..5497740 (25 bp)
CGAGGTGACAAGGATGCATATGGAT
LOC_Os06g10590
Target Sequence 
TTAGCATTAGCTATAGCAAGAGACAGAGACAGGGAGATGTTGCAGAGATACACTAGCTACAAGCTAGCTAGGCTTTACAT
TAATGGACAGAAGTCAATACCCGAACCATTCATCCTCTGCTGCTACAACACCAGCGACAACGCGCGAGGTGACAAGGATG
CATATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis