Browse Element(s) Details


Os.6861.1.S1_at

Description gb:AK062784.1
DB_XREF= gi:32972802
TID=Os.6861.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B06, full insert sequence.
FL= gb:AK062784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2359011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23550Os.6862.2.A1_at11/119+13993600..13995754mannitol dehydrogenase, putative, expressed
LOC_Os09g23560Os.5983.1.S1_at3/119+14000191..14002138oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23570NANA9+14006973..14008919Leucine Rich Repeat family protein, expressed
LOC_Os09g23580OsAffx.20695.1.S1_x_at1/119+14012383..14012973hypothetical protein
LOC_Os09g23590Os.6861.1.S1_at11/119+14019194..14019798expressed protein
LOC_Os09g23599NANA9+14021696..14022026NA
LOC_Os09g23610OsAffx.29992.1.S1_at11/119+14024469..14025794hypothetical protein
LOC_Os09g23620Os.3391.1.S1_at11/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23620Os.57514.1.S1_x_at1/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6861.1.S1_at--79--6051Chr09:14019250..14019274 (25 bp)
GAGATTTAATTCCATGGCGATTTCG
LOC_Os09g23590
Os.6861.1.S1_at--401--871Chr09:14019263..14019287 (25 bp)
ATGGCGATTTCGAGGTCAGCTCCAA
LOC_Os09g23590
Os.6861.1.S1_at--924--6011Chr09:14019597..14019621 (25 bp)
GAGAGTTAGTACCTGATGCCTGTCC
LOC_Os09g23590
Os.6861.1.S1_at--788--6352Chr09:14019611..14019635 (25 bp)
GATGCCTGTCCATGCTGACATGCTG
LOC_Os09g23590
Os.6861.1.S1_at--867--9111Chr09:14019623..14019647 (25 bp)
TGCTGACATGCTGTTTACTGTGATG
LOC_Os09g23590
Os.6861.1.S1_at--3--8691Chr09:14019641..14019665 (25 bp)
TGTGATGTCTATCTGCATGGTTCAG
LOC_Os09g23590
Os.6861.1.S1_at--708--9051Chr09:14019654..14019678 (25 bp)
TGCATGGTTCAGAGCTTTAGCTGTT
LOC_Os09g23590
Os.6861.1.S1_at--774--3671Chr09:14019668..14019692 (25 bp)
CTTTAGCTGTTGGTTGTAGCACACC
LOC_Os09g23590
Os.6861.1.S1_at--1119--6951Chr09:14019683..14019707 (25 bp)
GTAGCACACCAGATGTACATGTTAT
LOC_Os09g23590
Os.6861.1.S1_at--1085--6771Chr09:14019703..14019727 (25 bp)
GTTATTCCCCTCTCTTGTTTGTGTT
LOC_Os09g23590
Os.6861.1.S1_at--1156--7391Chr09:14019739..14019763 (25 bp)
GTGATCGAGTTTACTTACCTTGCTT
LOC_Os09g23590
Target Sequence 
GAGATTTAATTCCATGGCGATTTCGAGGTCAGCTCCAATGGAGGAGAGGNNTCAGCTGCAGGGAGCAAGAAGATCAGCGG
TCGGGGATTATCTGGNGNNGCNGCNGNNNNNNGNNGGNNNNTNCCNGNNNNNNANNCNNNNGNNNTNNNNNNNNNTNTCC
CCGCTCCGCCGCGCCGGCGGCGCCATNCCGGTCGGGGAGTGATCGATCGATGATGATCTTTTTTTTTTTTTGTGAGATCG
GAGAGTTAGTACCTGATGCCTGTCCATGCTGACATGCTGTTTACTGTGATGTCTATCTGCATGGTTCAGAGCTTTAGCTG
TTGGTTGTAGCACACCAGATGTACATGTTATTCCCCTCTCTTGTTTGTGTTGTAAAATATCAGTGATCGAGTTTACTTAC
CTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis