Browse Element(s) Details


Os.6863.1.S1_at

Description gb:AK066682.1
DB_XREF= gi:32976700
TID=Os.6863.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068M17, full insert sequence.
FL= gb:AK066682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1444011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14400NANA12+8208681..8211844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14410OsAffx.8469.1.S1_x_at2/1112+8212460..8213221retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.10731.1.A1_a_at7/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.38764.1.S1_x_at7/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.45173.1.S1_x_at2/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14430OsAffx.31869.5.S1_x_at2/1112+8226238..8227338retrotransposon protein, putative, unclassified
LOC_Os12g14430OsAffx.31869.1.S1_at1/1112+8226238..8227338retrotransposon protein, putative, unclassified
LOC_Os12g14440Os.6863.1.S1_at11/1112+8236835..8238552expressed protein
LOC_Os12g14440Os.6863.1.S1_s_at11/1112+8236835..8238552expressed protein
LOC_Os12g14450OsAffx.19665.1.S1_at10/1112+8241493..8242711hypothetical protein
LOC_Os12g14460Os.27691.1.S1_x_at1/1112+8247715..8252280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.2.S1_x_at3/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.1.S1_x_at1/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6863.1.S1_at--324--7811Chr12:8237900..8237924 (25 bp)
GGTCTGTTGACTCAATCTCGTTTAC
LOC_Os12g14440
Os.6863.1.S1_at--1016--7171Chr12:8237901..8237925 (25 bp)
GTCTGTTGACTCAATCTCGTTTACT
LOC_Os12g14440
Os.6863.1.S1_at--586--3871Chr12:8237903..8237927 (25 bp)
CTGTTGACTCAATCTCGTTTACTTA
LOC_Os12g14440
Os.6863.1.S1_at--571--6651Chr12:8237905..8237929 (25 bp)
GTTGACTCAATCTCGTTTACTTACC
LOC_Os12g14440
Os.6863.1.S1_at--1058--5671Chr12:8237908..8237932 (25 bp)
GACTCAATCTCGTTTACTTACCTTG
LOC_Os12g14440
Os.6863.1.S1_at--958--10151Chr12:8238419..8238443 (25 bp)
TATCATTCCTGTTGTGATGAGTGAT
LOC_Os12g14440
Os.6863.1.S1_at--747--91Chr12:8238423..8238447 (25 bp)
ATTCCTGTTGTGATGAGTGATGCTT
LOC_Os12g14440
Os.6863.1.S1_at--535--10831Chr12:8238430..8238454 (25 bp)
TTGTGATGAGTGATGCTTGGTCGCT
LOC_Os12g14440
Os.6863.1.S1_at--1048--1131Chr12:8238457..8238481 (25 bp)
AGTCCTTCTGAATTTACAGTCGTGT
LOC_Os12g14440
Os.6863.1.S1_at--225--4311Chr12:8238460..8238484 (25 bp)
CCTTCTGAATTTACAGTCGTGTCCT
LOC_Os12g14440
Os.6863.1.S1_at--742--10591Chr12:8238462..8238486 (25 bp)
TTCTGAATTTACAGTCGTGTCCTAT
LOC_Os12g14440
Target Sequence 
GGTCTGTTGACTCAATCTCGTTTACTTACCTTGNCCATNCCGGAGAGAAGCACAAGGCAGGTCCATGGGGTGGTCCTGGC
GGGGATCCCATAATGATTGAATTTGGCAGTTCAGAGTTTCTCAAGNAAGTTTNTGGAACGTTTGGCCCATATGAGGGCAG
CNCCGTTATAACATCTATTAATTTTATCACCAATAAGCAAACATATGGCCCATTTGGACGACAGGAGGGAACCCCTTTCA
GTGTCCCAGCGCAGAATAACTCCAGTATAGTGGGTTTCTTTGGGCGCAGTGGGAAATACATAAATGCAGTTGGTGTNTAC
GTGCAGCCGATCTAACTTGTCAAAATAAGTATTCCGTGTTTGAGTTTCACGTGTGTTTTCTGCAGTAAACAAATAAGATG
GGGGTCCTCCCTATCATTCCTGTTGTGATGAGTGATGCTTGGTCGCTGGAGTCCTTCTGAATTTACAGTCGTGTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis