Browse Element(s) Details


OsAffx.19665.1.S1_at

Description tigr:9640.m01402
TID=OsAffx.19665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1445010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14420Os.10731.1.A1_a_at7/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.38764.1.S1_x_at7/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.45173.1.S1_x_at2/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14430OsAffx.31869.5.S1_x_at2/1112+8226238..8227338retrotransposon protein, putative, unclassified
LOC_Os12g14430OsAffx.31869.1.S1_at1/1112+8226238..8227338retrotransposon protein, putative, unclassified
LOC_Os12g14440Os.6863.1.S1_at11/1112+8236835..8238552expressed protein
LOC_Os12g14440Os.6863.1.S1_s_at11/1112+8236835..8238552expressed protein
LOC_Os12g14450OsAffx.19665.1.S1_at10/1112+8241493..8242711hypothetical protein
LOC_Os12g14460Os.27691.1.S1_x_at1/1112+8247715..8252280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.2.S1_x_at3/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.1.S1_x_at1/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14480OsAffx.19666.1.S1_at11/1112+8263718..8267530Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19665.1.S1_at--596--2431Chr12:8242635..8242659 (25 bp)
AAAAGTATGCCCAATGCGTCGACCA
LOC_Os12g14450
OsAffx.19665.1.S1_at--581--9371Chr12:8242617..8242641 (25 bp)
TCGACCAGGCTAGGCTTTCACTTGC
LOC_Os12g14450
OsAffx.19665.1.S1_at--56--931Chr12:8242611..8242635 (25 bp)
AGGCTAGGCTTTCACTTGCCTCCCA
LOC_Os12g14450
OsAffx.19665.1.S1_at--1126--3791NONE
CTCCCACCCGATTTATACATGCATT
NONE
OsAffx.19665.1.S1_at--14--4231Chr12:8241852..8241874 (23 bp)
CCGATTTATACATGCATTAACGGTG
LOC_Os12g14450
OsAffx.19665.1.S1_at--1081--10331Chr12:8241816..8241840 (25 bp)
TTTAACTGTCGTCAACAGACACTGC
LOC_Os12g14450
OsAffx.19665.1.S1_at--439--3811Chr12:8241719..8241743 (25 bp)
CTCCATTGTGTTGCCGCCTGAGGAA
LOC_Os12g14450
OsAffx.19665.1.S1_at--1109--8191Chr12:8241698..8241722 (25 bp)
GGAAGGGCGTAGCAGCTCCCCACCA
LOC_Os12g14450
OsAffx.19665.1.S1_at--83--2171Chr12:8241674..8241698 (25 bp)
ACACCAAACCGGTTGCACGCTGCAT
LOC_Os12g14450
OsAffx.19665.1.S1_at--497--7911Chr12:8241664..8241688 (25 bp)
GGTTGCACGCTGCATTGTCTCCACG
LOC_Os12g14450
OsAffx.19665.1.S1_at--497--7291Chr12:8241634..8241658 (25 bp)
GTGCCGCCAAGCCTTCATGGTCACG
LOC_Os12g14450
Target Sequence 
AAAAGTATGCCCAATGCGTCGACCAGGCTAGGCTTTCACTTGCCTCCCACCCGATTTATACATGCATTAACGGTGTAAAT
TTGGTATTTAACTGTCGTCAACAGACACTGCTGCTCCGATGCCCCTCGCCAGCCAACCTCTGCCTGCCTCAGGGGTCATC
ATCGCCAGCCACCCTCGAGCATCCTCCATTGTGTTGCCGCCTGAGGAAGGGCGTAGCAGCTCCCCACCACACCAAACCGG
TTGCACGCTGCATTGTCTCCACGGTGGCGTGCCGCCAAGCCTTCATGGTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis