Browse Element(s) Details


Os.6864.1.S1_at

Description gb:AJ308374.1
DB_XREF= gi:18250911
GEN=atx
TID=Os.6864.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6864 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for ATX protein.
PROD=ATX protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6107011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61020OsAffx.24045.1.S1_at11/111+35636453..35639614D-mannose binding lectin family protein
LOC_Os01g61030Os.47944.1.S1_a_at11/111+35641322..35645694VHS domain containing protein, expressed
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6864.1.S1_at--875--3051Chr01:35659583..35659607 (25 bp)
AATCTCTCTCTACTTTCCAAACATG
LOC_Os01g61070
Os.6864.1.S1_at--13--4611Chr01:35659819..35659843 (25 bp)
GCGACAGGTGCATCAAGGCGATCAA
LOC_Os01g61070
Os.6864.1.S1_at--1110--3351Chr01:35660007..35660031 (25 bp)
CACCGTGACAGGAAATGTTACCCCA
LOC_Os01g61070
Os.6864.1.S1_at--760--572Chr11:24480526..24480545 (20 bp)
ATGTTACCCCAGATGAAGTCGTCAA
NONE
Os.6864.1.S1_at--252--5331Chr01:35660093..35660117 (25 bp)
GAAGTGTTCATCTTTAGCTAGTAGT
LOC_Os01g61070
Os.6864.1.S1_at--320--10171Chr01:35660121..35660145 (25 bp)
TATCAGCTGATGACTTGATGTCCTT
LOC_Os01g61070
Os.6864.1.S1_at--731--10771Chr01:35660135..35660159 (25 bp)
TTGATGTCCTTAGTCCTTAGTCCTT
LOC_Os01g61070
Os.6864.1.S1_at--280--7251Chr01:35660147..35660171 (25 bp)
GTCCTTAGTCCTTTCTATGGTTACT
LOC_Os01g61070
Os.6864.1.S1_at--571--6771Chr01:35660166..35660190 (25 bp)
GTTACTTTGAGCTGTTTATACTGCA
LOC_Os01g61070
Os.6864.1.S1_at--830--2851Chr01:35660217..35660241 (25 bp)
AAGTGGGTAAACTCGGCATTGCTTA
LOC_Os01g61070
Os.6864.1.S1_at--1067--4891Chr01:35660237..35660261 (25 bp)
GCTTACTCTCCCTCAGTAGTTGATT
LOC_Os01g61070
Target Sequence 
AATCTCTCTCTACTTTCCAAACATGGCTGTGGTGGAGTTGAAGGTTGGGATGCACTGCGACAGGTGCATCAAGGCGATCA
AGAAGGCAATAAAAACGATCGATGATATGGAGAGTTATCAGCTAGAGACAGAGATAAACAAGGTCACCGTGACAGGAAAT
GTTACCCCAGATGAAGTCGTCAAGGCTCTGCAGAAGATTGGGAAGACGGCAACTAACTGGGGTGAAGACTGAAGTGTTCA
TCTTTAGCTAGTAGTATATATCAGCTGATGACTTGATGTCCTTAGTCCTTAGTCCTTTCTATGGTTACTTTGAGCTGTTT
ATACTGCAGATATACAGTAGTACTAAGGAACATAAAGTGGGTAAACTCGGCATTGCTTACTCTCCCTCAGTAGTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis