Browse Element(s) Details


Os.6960.1.S1_at

Description gb:AK106672.1
DB_XREF= gi:32991881
TID=Os.6960.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A02, full insert sequence.
FL= gb:AK106672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3988011/11cytochrome P450, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39870Os.5316.1.S1_at10/116+23684182..2368726326S protease regulatory subunit 8, putative, expressed
LOC_Os06g39880Os.6960.1.S1_at11/116+23703718..23706251cytochrome P450, putative, expressed
LOC_Os06g39890OsAffx.15850.1.S1_at11/116+23706545..23708083hypothetical protein
LOC_Os06g39890OsAffx.29628.1.S1_at1/116+23706545..23708083hypothetical protein
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6960.1.S1_at--924--451Chr06:23705802..23705826 (25 bp)
ATCTCAGCCGTCCAATTAGCTACTA
LOC_Os06g39880
Os.6960.1.S1_at--522--2671Chr06:23705872..23705896 (25 bp)
AAGCCCCTGTCCGTTGTGTGCATAG
LOC_Os06g39880
Os.6960.1.S1_at--726--3951Chr06:23705958..23705982 (25 bp)
CGGATTCCGAAAATGCCCTCGCTAA
LOC_Os06g39880
Os.6960.1.S1_at--146--611Chr06:23705970..23705994 (25 bp)
ATGCCCTCGCTAACAGACTAGTGGT
LOC_Os06g39880
Os.6960.1.S1_at--1112--7831Chr06:23705992..23706016 (25 bp)
GGTACGATCAGAGCACAACTTTTAG
LOC_Os06g39880
Os.6960.1.S1_at--497--7691Chr06:23706067..23706091 (25 bp)
GGGTAGTAGCAGTAGCCCCACACAT
LOC_Os06g39880
Os.6960.1.S1_at--1154--9431Chr06:23706099..23706123 (25 bp)
TCGGTTGCTTCCATTTGTTCTCTTC
LOC_Os06g39880
Os.6960.1.S1_at--471--6571Chr06:23706135..23706159 (25 bp)
GATTCTGGTGTATGTATCGATCAAT
LOC_Os06g39880
Os.6960.1.S1_at--838--10151Chr06:23706149..23706173 (25 bp)
TATCGATCAATGCATGTACCTGTAT
LOC_Os06g39880
Os.6960.1.S1_at--991--6531Chr06:23706197..23706221 (25 bp)
GATTATTTTGATTCGGGACACCCGG
LOC_Os06g39880
Os.6960.1.S1_at--1057--1791Chr06:23706216..23706240 (25 bp)
ACCCGGCACTTCACAGCAAAGGAGA
LOC_Os06g39880
Target Sequence 
ATCTCAGCCGTCCAATTAGCTACTATTACTAGGTAGGAGTACTAGTATTGCTAGCTAGGAAAAGACAGGAAAGCCCCTGT
CCGTTGTGTGCATAGTGACACAGGAAAAGGCCAAGAGACAACTAACAAAAGGCTCTGCCCGTGGCAGGGGCAGGGCCGGA
TTCCGAAAATGCCCTCGCTAACAGACTAGTGGTACGATCAGAGCACAACTTTTAGGGATTTGATGGGTCAGAAACTCTCA
GAAGAGAAGAAGAGAGACAGTAGTAGGGTAGTAGCAGTAGCCCCACACATCCACTGCTCGGTTGCTTCCATTTGTTCTCT
TCTCCTTCGCGTGGATTCTGGTGTATGTATCGATCAATGCATGTACCTGTATGTGTGTGTTGTGTACAGGGGTGTGATTA
TTTTGATTCGGGACACCCGGCACTTCACAGCAAAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis