Browse Element(s) Details


Os.7085.2.S1_x_at

Description gb:AK103728.1
DB_XREF= gi:32988937
TID=Os.7085.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7085 (NCBI UniGene Cluster)
UG_TITLE=OsRAD23 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full insert sequence.
FL= gb:AK103728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4770011/11NAD-dependent epimerase/dehydratase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein
LOC_Os07g47700Os.7085.2.S1_x_at11/117+28493024..28496411NAD-dependent epimerase/dehydratase family protein, putative, expressed
LOC_Os07g47710Os.48988.1.S1_at8/117+28499227..2850069860S ribosomal protein L22-2, putative, expressed
LOC_Os07g47720Os.56867.1.S1_at11/117+28501369..28503801pentatricopeptide, putative, expressed
LOC_Os07g47730OsAffx.21897.5.S1_x_at4/117+28510359..28513299retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47740NANA7+28513619..28519714retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0042732biological_processD-xylose metabolism
GO:0000139cellular_componentGolgi membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7085.2.S1_x_at--1111--7231Chr07:28495883..28495907 (25 bp)
GTCGCCGGCGACAACTGAATCTGAA
LOC_Os07g47700
Os.7085.2.S1_x_at--779--10411Chr07:28495925..28495949 (25 bp)
TTATCTCACCGGCATTTTCTGTAGA
LOC_Os07g47700
Os.7085.2.S1_x_at--731--6251Chr07:28496063..28496087 (25 bp)
GATGGGATCGCGTCAGAATCGAACC
LOC_Os07g47700
Os.7085.2.S1_x_at--942--5231Chr07:28496078..28496102 (25 bp)
GAATCGAACCAATACGCAAGCTCAT
LOC_Os07g47700
Os.7085.2.S1_x_at--288--1271Chr07:28496158..28496182 (25 bp)
AGATATATGTAGGTCGTCGCTGGAG
LOC_Os07g47700
Os.7085.2.S1_x_at--758--7651Chr07:28496191..28496215 (25 bp)
GGGATGCAGCACGAGATCGCCCTGT
LOC_Os07g47700
Os.7085.2.S1_x_at--511--6371Chr07:28496205..28496229 (25 bp)
GATCGCCCTGTTATTTCTTAGTTTT
LOC_Os07g47700
Os.7085.2.S1_x_at--167--6811Chr07:28496225..28496249 (25 bp)
GTTTTGCGTTTTTACATGTCCGATG
LOC_Os07g47700
Os.7085.2.S1_x_at--798--771Chr07:28496240..28496264 (25 bp)
ATGTCCGATGTTTTACTCTCTTTTT
LOC_Os07g47700
Os.7085.2.S1_x_at--425--4031Chr07:28496294..28496318 (25 bp)
CGTTCTGTTGTTTTACGTGCTTTCG
LOC_Os07g47700
Os.7085.2.S1_x_at--132--791Chr07:28496350..28496374 (25 bp)
ATGTGTTACTTCGTTCTGTGTTTGC
LOC_Os07g47700
Target Sequence 
GTCGCCGGCGACAACTGAATCTGAATCTGAACTCGATCGATCTTATCTCACCGGCATTTTCTGTAGAAGTTGATCAAGAT
ATACACAGTACTACCAGCATAGAAGAAGCAGGAGCAGCAGCTAGCAGTACTGGTGAGTGGTGACTGATAGATCCATGAAT
GGCTGCATTGCAAGAATGGGGATGGGATCGCGTCAGAATCGAACCAATACGCAAGCTCATGTTTGTAGGAGTTGAATATT
TTATCTATGCTGCGGAATTAAGCAAGCATGATACAAGATATATGTAGGTCGTCGCTGGAGTGGTAGCTGGGATGCAGCAC
GAGATCGCCCTGTTATTTCTTAGTTTTGCGTTTTTACATGTCCGATGTTTTACTCTCTTTTTGGGGGAATGCATGATAGC
TGTAAGTTATTCGTTCTGTTGTTTTACGTGCTTTCGTTATGTGGAACTTGTCAATCAAGGAGAANGCATGTGTTACTTCG
TTCTGTGTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7085.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis