Browse Element(s) Details


Os.7115.1.S1_a_at

Description gb:AK068657.1
DB_XREF= gi:32978674
TID=Os.7115.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013163L17, full insert sequence.
FL= gb:AK068657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5720011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57150Os.27939.1.A1_at11/114+33835254..33839085Tafazzin, putative, expressed
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7115.1.S1_a_at--90--1451Chr04:33862334..33862358 (25 bp)
AGAAGCCAGAGCAACCCAAGCTCGT
LOC_Os04g57200
Os.7115.1.S1_a_at--131--1191Chr04:33862427..33862451 (25 bp)
AGTACGTCGTCCACAGCGCCGAGGA
LOC_Os04g57200
Os.7115.1.S1_a_at--198--2551Chr04:33862459..33862483 (25 bp)
AACTCGTGCGTCATCTGCTGATCAT
LOC_Os04g57200
Os.7115.1.S1_a_at--447--6431Chr04:33862478..33862502 (25 bp)
GATCATGGCGTCGTTAGCTTGTACA
LOC_Os04g57200
Os.7115.1.S1_a_at--325--4031Chr04:33862489..33862513 (25 bp)
CGTTAGCTTGTACATTTTGCAGTTC
LOC_Os04g57200
Os.7115.1.S1_a_at--1087--10731Chr04:33862505..33862529 (25 bp)
TTGCAGTTCGTCTAGCTGATCAACC
LOC_Os04g57200
Os.7115.1.S1_a_at--999--8831Chr04:33862521..33862545 (25 bp)
TGATCAACCTACTCACCGGTGGTCA
LOC_Os04g57200
Os.7115.1.S1_a_at--316--431Chr04:33862603..33862627 (25 bp)
ATCATTTGGCTGGTTCTCTGGCTCA
LOC_Os04g57200
Os.7115.1.S1_a_at--872--10571Chr04:33862616..33862640 (25 bp)
TTCTCTGGCTCAGCTCGGTGACGGT
LOC_Os04g57200
Os.7115.1.S1_a_at--774--7471Chr04:33862659..33862683 (25 bp)
GTGTGTATATGGTTGCTGCGCTTGC
LOC_Os04g57200
Os.7115.1.S1_a_at--600--3631Chr04:33862679..33862703 (25 bp)
CTTGCTTGTTGCTACTTGCTAGTAC
LOC_Os04g57200
Target Sequence 
AGAAGCCAGAGCAACCCAAGCTCGTCTTCTACCCGCCGCCGCCGGCGTGGCACGCCCACGCCGCGCCGCCGTCGTACAGC
TACGCGCCGCCGCAGTACGTCGTCCACAGCGCCGAGGAGGACCCCAACTCGTGCGTCATCTGCTGATCATGGCGTCGTTA
GCTTGTACATTTTGCAGTTCGTCTAGCTGATCAACCTACTCACCGGTGGTCACTGATCGGGACCCGGACGTGGCGGTGGT
TGGGTGTCGCACGCTTGCACTCCTCCCCTATCATTTGGCTGGTTCTCTGGCTCAGCTCGGTGACGGTGATGATGCGTTTG
GTTTTGTGTGTATATGGTTGCTGCGCTTGCTTGTTGCTACTTGCTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7115.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis